-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_701

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4754, 4896
Sorry, prediction snap_scaffold_701-snap.1-T1 fails validation.
(ATG)	 TT	2507-2564	GT	AGG
(CTT)	 AG	2969-3266	GT	AGG
(GGG)	 AG	3756-3819	GT	CAG
(AAG)	 AG	4527-4633	GT	AGG
(GAA)	 AG	4754-4896	GT	GAG
-recovered snap_scaffold_701-snap.1-T1, initial, 2507, 2564
-recovered snap_scaffold_701-snap.1-T1, internal, 2969, 3266
-recovered snap_scaffold_701-snap.1-T1, internal, 3756, 3819
-recovered snap_scaffold_701-snap.1-T1, internal, 4527, 4633
-recovered snap_scaffold_701-snap.1-T1, internal, 4754, 4896

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 63, 190
Sorry, prediction pasa_asmbl_51552.p1 fails validation.
(GCC)	 CA	63-190	GT	AGG
(GGT)	 AG	371-512	GT	AGG
(GAG)	 AG	616-721	GT	AGG
(AGC)	 AG	1073-1203	GT	AGG
(GGC)	 AG	1306-1401	GT	AGG
(GGT)	 AG	1712-2353	TA	AAT
-recovered pasa_asmbl_51552.p1, terminal, 1712, 2353
-recovered pasa_asmbl_51552.p1, internal, 371, 512
-recovered pasa_asmbl_51552.p1, internal, 616, 721
-recovered pasa_asmbl_51552.p1, internal, 1073, 1203
-recovered pasa_asmbl_51552.p1, internal, 1306, 1401
Valid prediction for GlimmerHMM_glimmerT_62137-T1
Valid prediction for HiQ_model.g41303.t1
Valid prediction for CodingQuarry_transcript_57639-T1
Couldn't classify 64, 190
Sorry, prediction snap_scaffold_701-snap.2-T1 fails validation.
(CCC)	 AG	64-190	GT	AGG
(GGT)	 AG	371-512	GT	AGG
(GAG)	 AG	616-721	GT	AGG
(AGC)	 AG	1073-1203	GT	AGG
(GGC)	 AG	1306-1401	GT	AGG
(GGT)	 AG	1712-2353	TA	AAT
-recovered snap_scaffold_701-snap.2-T1, terminal, 1712, 2353
-recovered snap_scaffold_701-snap.2-T1, internal, 64, 190
-recovered snap_scaffold_701-snap.2-T1, internal, 371, 512
-recovered snap_scaffold_701-snap.2-T1, internal, 616, 721
-recovered snap_scaffold_701-snap.2-T1, internal, 1073, 1203
-recovered snap_scaffold_701-snap.2-T1, internal, 1306, 1401
Valid prediction for GlimmerHMM_glimmerT_62138-T1
Couldn't classify 64, 197
Sorry, prediction GeneMark_model.108226_t fails validation.
(CCC)	 AG	64-197	GT	GGG
(GAT)	 AG	223-344	GT	CAG
(GGT)	 AG	371-512	GT	AGG
(GAG)	 AG	616-721	GT	AGG
(AGC)	 AG	1073-1203	GT	AGG
(GGC)	 AG	1306-1401	GT	AGG
(GGT)	 AG	1712-2353	TA	AAT
-recovered GeneMark_model.108226_t, terminal, 1712, 2353
-recovered GeneMark_model.108226_t, internal, 64, 197
-recovered GeneMark_model.108226_t, internal, 223, 344
-recovered GeneMark_model.108226_t, internal, 371, 512
-recovered GeneMark_model.108226_t, internal, 616, 721
-recovered GeneMark_model.108226_t, internal, 1073, 1203
-recovered GeneMark_model.108226_t, internal, 1306, 1401

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4896, rend_intergenic: 2583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4935
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4896, rend_intergenic: 2583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support