-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_8541557-8736065

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_18235-T1
Couldn't classify 67826, 68096
Couldn't classify 68226, 68302
Sorry, prediction pasa_asmbl_50911.p1 fails validation.
(GAA)	 CT	67826-68096	GT	TGG
(GTG)	 AG	68226-68302	GG	TGG
Valid prediction for CodingQuarry_transcript_57418-T1
Couldn't classify 133868, 134000
Couldn't classify 134716, 134847
Sorry, prediction pasa_asmbl_50919.p1 fails validation.
(AAT)	 GG	133868-134000	GT	AGG
(ATG)	 AG	134246-134314	GT	TGG
(GCT)	 AG	134407-134531	GT	AGG
(GTG)	 AG	134716-134847	AA	TGA
add_exon() Sorry, pasa_asmbl_50919.p1 134246-134314-initial-1 is invalid.
-recovered pasa_asmbl_50919.p1, initial, 134246, 134314
-recovered pasa_asmbl_50919.p1, internal, 134246, 134314
-recovered pasa_asmbl_50919.p1, internal, 134407, 134531
Valid prediction for GeneMark_model.30564_t
Valid prediction for GlimmerHMM_glimmerT_18240-T1
Valid prediction for snap_scaffold_7-snap.1716-T1
Valid prediction for GeneMark_model.30578_t
Valid prediction for snap_scaffold_7-snap.1721-T1
Valid prediction for GlimmerHMM_glimmerT_18237-T1
Valid prediction for GlimmerHMM_glimmerT_18238-T1
Couldn't classify 137861, 138139
Sorry, prediction pasa_asmbl_51440.p2 fails validation.
(ATG)	 AA	137658-137711	GT	AGG
(AAC)	 AG	137861-138139	GA	GGG
-recovered pasa_asmbl_51440.p2, initial, 137658, 137711
Valid prediction for GeneMark_model.30579_t
Valid prediction for snap_scaffold_7-snap.1732-T1
Valid prediction for GlimmerHMM_glimmerT_18233-T1
Valid prediction for snap_scaffold_7-snap.1713-T1
Valid prediction for snap_scaffold_7-snap.1720-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.30589_t
Valid prediction for GeneMark_model.30590_t
Valid prediction for Augustus_model.g12276.t1
Valid prediction for GlimmerHMM_glimmerT_18222-T1
Valid prediction for GeneMark_model.30597_t
Valid prediction for Augustus_model.g12273.t1
Valid prediction for HiQ_model.g12266.t1
Valid prediction for GeneMark_model.30576_t
Couldn't classify 68327, 68333
Sorry, prediction pasa_asmbl_50912.p1 fails validation.
(CCA)	 CA	68327-68333	GT	TGG
(TTC)	 AG	68495-68689	GT	AGG
(AAT)	 AG	68877-69023	GT	AGG
(ACG)	 AG	69158-69361	GT	AGG
(GTG)	 AG	69590-69827	GT	AGG
(GCC)	 AG	70035-70150	GT	TGG
(CTC)	 AG	70365-70540	AC	GAA
-recovered pasa_asmbl_50912.p1, terminal, 70365, 70540
-recovered pasa_asmbl_50912.p1, internal, 68495, 68689
-recovered pasa_asmbl_50912.p1, internal, 68877, 69023
-recovered pasa_asmbl_50912.p1, internal, 69158, 69361
-recovered pasa_asmbl_50912.p1, internal, 69590, 69827
-recovered pasa_asmbl_50912.p1, internal, 70035, 70150
Valid prediction for GlimmerHMM_glimmerT_18234-T1
Valid prediction for GeneMark_model.30562_t
Valid prediction for snap_scaffold_7-snap.1724-T1
Valid prediction for GlimmerHMM_glimmerT_18226-T1
Couldn't classify 151646, 151749
Sorry, prediction pasa_asmbl_50923.p1 fails validation.
(CAT)	 CC	151646-151749	GT	AGG
(AGG)	 AG	151948-151978	GT	AAG
(GTT)	 AG	152123-152168	GT	AGG
(GTT)	 AG	152272-152401	GT	GGG
(AGT)	 AG	152602-152639	GT	AGG
(GAA)	 AG	153027-153106	GT	TGG
(GTG)	 AG	153194-153276	GT	AAG
(TGT)	 AG	153888-153966	GT	AGG
(CTC)	 AG	154523-154650	GT	AGG
(TGA)	 AG	155064-155097	CA	AGC
-recovered pasa_asmbl_50923.p1, terminal, 155064, 155097
-recovered pasa_asmbl_50923.p1, internal, 151948, 151978
-recovered pasa_asmbl_50923.p1, internal, 152123, 152168
-recovered pasa_asmbl_50923.p1, internal, 152272, 152401
-recovered pasa_asmbl_50923.p1, internal, 152602, 152639
-recovered pasa_asmbl_50923.p1, internal, 153027, 153106
-recovered pasa_asmbl_50923.p1, internal, 153194, 153276
-recovered pasa_asmbl_50923.p1, internal, 153888, 153966
-recovered pasa_asmbl_50923.p1, internal, 154523, 154650
Valid prediction for snap_scaffold_7-snap.1738-T1
Valid prediction for GeneMark_model.30566_t
Valid prediction for pasa_asmbl_50915.p1
Valid prediction for snap_scaffold_7-snap.1708-T1
Valid prediction for HiQ_model.g12263.t1
Valid prediction for HiQ_model.g12275.t1
Valid prediction for GeneMark_model.30581_t
Valid prediction for snap_scaffold_7-snap.1734-T1
Valid prediction for Augustus_model.g12261.t1
Valid prediction for GeneMark_model.30592_t
Valid prediction for GeneMark_model.30570_t
Valid prediction for snap_scaffold_7-snap.1733-T1
Valid prediction for snap_scaffold_7-snap.1725-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.1706-T1
Valid prediction for GeneMark_model.30583_t
Valid prediction for GeneMark_model.30586_t
Valid prediction for GeneMark_model.30568_t
Valid prediction for HiQ_model.g12278.t1
Valid prediction for GlimmerHMM_glimmerT_18219-T1
Valid prediction for snap_scaffold_7-snap.1719-T1
Couldn't classify 66797, 67264
Sorry, prediction pasa_asmbl_50910.p1 fails validation.
(AAA)	 CC	66797-67264	AC	CCA
Valid prediction for Augustus_model.g12259.t1
Valid prediction for CodingQuarry_transcript_57422-T1
Valid prediction for Augustus_model.g12271.t1
Valid prediction for GlimmerHMM_glimmerT_18242-T1
Couldn't classify 10720, 10880
Couldn't classify 11446, 11541
Sorry, prediction pasa_asmbl_50900.p1 fails validation.
(GCA)	 CA	10720-10880	GT	GAG
(GAC)	 AG	11108-11210	GT	AGG
(GAT)	 AG	11446-11541	CC	AAC
-recovered pasa_asmbl_50900.p1, internal, 11108, 11210
Valid prediction for Augustus_model.g12262.t1
Valid prediction for GlimmerHMM_glimmerT_18230-T1
Couldn't classify 12091, 12195
Sorry, prediction pasa_asmbl_50901.p1 fails validation.
(CGC)	 GC	12091-12195	GT	TGG
(GTC)	 AG	12538-12730	GT	GGG
(GCT)	 AG	13074-13371	GT	AGG
(TGA)	 AG	13488-13663	GT	AGG
(GCA)	 AG	13913-14043	GT	AGG
(TGT)	 AG	14196-14321	CC	GAC
-recovered pasa_asmbl_50901.p1, terminal, 14196, 14321
-recovered pasa_asmbl_50901.p1, internal, 12538, 12730
-recovered pasa_asmbl_50901.p1, internal, 13074, 13371
-recovered pasa_asmbl_50901.p1, internal, 13488, 13663
-recovered pasa_asmbl_50901.p1, internal, 13913, 14043
Valid prediction for GlimmerHMM_glimmerT_18214-T1
Valid prediction for snap_scaffold_7-snap.1736-T1
Valid prediction for Augustus_model.g12257.t1
Valid prediction for GeneMark_model.30594_t
Valid prediction for pasa_asmbl_50909.p3
Couldn't classify 38785, 39084
Sorry, prediction pasa_asmbl_50905.p1 fails validation.
(CGC)	 CA	38785-39084	GA	GTG
Valid prediction for Augustus_model.g12265.t1
Valid prediction for snap_scaffold_7-snap.1715-T1
Valid prediction for GlimmerHMM_glimmerT_18218-T1
Valid prediction for snap_scaffold_7-snap.1728-T1
Valid prediction for GeneMark_model.30571_t
Valid prediction for GlimmerHMM_glimmerT_18224-T1
Valid prediction for snap_scaffold_7-snap.1729-T1
Valid prediction for GeneMark_model.30573_t
Valid prediction for GeneMark_model.30587_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g12277.t1
Valid prediction for snap_scaffold_7-snap.1726-T1
Valid prediction for pasa_asmbl_49831.p1
Valid prediction for snap_scaffold_7-snap.1727-T1
Valid prediction for HiQ_model.g12279.t1
Valid prediction for snap_scaffold_7-snap.1723-T1
Valid prediction for snap_scaffold_7-snap.1730-T1
Valid prediction for Augustus_model.g12256.t1
Valid prediction for GeneMark_model.30572_t
Valid prediction for snap_scaffold_7-snap.1707-T1
Valid prediction for GeneMark_model.30563_t
Valid prediction for GlimmerHMM_glimmerT_18221-T1
Valid prediction for GlimmerHMM_glimmerT_18220-T1
Valid prediction for GlimmerHMM_glimmerT_18225-T1
Valid prediction for GlimmerHMM_glimmerT_18216-T1
Valid prediction for GlimmerHMM_glimmerT_18236-T1
Valid prediction for GeneMark_model.30584_t
Couldn't classify 101599, 101661
Sorry, prediction pasa_asmbl_49834.p1 fails validation.
(ATG)	 AC	97215-97297	GT	CGG
(GGA)	 AG	100272-100463	GT	AAG
(TAA)	 AG	100672-100752	GT	AGG
(AGC)	 AG	100849-100961	GT	AGG
(ACA)	 AG	101180-101238	GT	ATG
(AAC)	 AG	101599-101661	AA	GCA
-recovered pasa_asmbl_49834.p1, initial, 97215, 97297
-recovered pasa_asmbl_49834.p1, internal, 100272, 100463
-recovered pasa_asmbl_49834.p1, internal, 100672, 100752
-recovered pasa_asmbl_49834.p1, internal, 100849, 100961
-recovered pasa_asmbl_49834.p1, internal, 101180, 101238
Valid prediction for GlimmerHMM_glimmerT_18215-T1
Valid prediction for Augustus_model.g12269.t1
Valid prediction for snap_scaffold_7-snap.1714-T1
Valid prediction for snap_scaffold_7-snap.1737-T1
Valid prediction for GeneMark_model.30560_t
Valid prediction for pasa_asmbl_49837.p1
Valid prediction for snap_scaffold_7-snap.1711-T1
Valid prediction for GeneMark_model.30577_t
Valid prediction for pasa_asmbl_49844.p1
Valid prediction for GeneMark_model.30580_t
Valid prediction for HiQ_model.g12264.t1
Valid prediction for GlimmerHMM_glimmerT_18239-T1
Valid prediction for GeneMark_model.30569_t
Valid prediction for GlimmerHMM_glimmerT_18241-T1
Valid prediction for snap_scaffold_7-snap.1731-T1
Valid prediction for GeneMark_model.30591_t
Valid prediction for GeneMark_model.30565_t
Valid prediction for snap_scaffold_7-snap.1735-T1
Valid prediction for GlimmerHMM_glimmerT_18232-T1
Valid prediction for HiQ_model.g12274.t1
Valid prediction for snap_scaffold_7-snap.1722-T1
Valid prediction for Augustus_model.g12270.t1
Valid prediction for GeneMark_model.30575_t
Valid prediction for Augustus_model.g12267.t1
Valid prediction for CodingQuarry_transcript_57419-T1
Valid prediction for snap_scaffold_7-snap.1712-T1
Valid prediction for GlimmerHMM_glimmerT_18231-T1
Valid prediction for GeneMark_model.30559_t
Valid prediction for GlimmerHMM_glimmerT_18223-T1
Valid prediction for GeneMark_model.30582_t
Couldn't classify 163840, 164160
Sorry, prediction pasa_asmbl_49830.p2 fails validation.
(ATG)	 TC	163840-164160	TG	GGT
Valid prediction for GeneMark_model.30567_t
Valid prediction for CodingQuarry_transcript_57423-T1
Valid prediction for snap_scaffold_7-snap.1710-T1
Couldn't classify 27045, 27263
Couldn't classify 28585, 28674
Sorry, prediction pasa_asmbl_49841.p1 fails validation.
(GAA)	 AC	27045-27263	GT	AGG
(AGG)	 AG	28585-28674	GC	AGG
-recovered pasa_asmbl_49841.p1, internal, 28585, 28674
Valid prediction for GeneMark_model.30593_t
Valid prediction for snap_scaffold_7-snap.1717-T1
Couldn't classify 170447, 170568
Sorry, prediction pasa_asmbl_49828.p1 fails validation.
(AAC)	 GG	170447-170568	GT	ATG
(GTA)	 AG	170691-170797	GT	AGG
(TTG)	 AG	171198-171281	GT	AGG
(GTG)	 AG	172199-172468	GT	TGG
(GTC)	 AG	174114-174547	GT	AGG
(GCT)	 AG	174723-176253	GT	AGG
(TAC)	 AG	176567-176970	GG	GAG
-recovered pasa_asmbl_49828.p1, terminal, 176567, 176970
-recovered pasa_asmbl_49828.p1, internal, 170691, 170797
-recovered pasa_asmbl_49828.p1, internal, 171198, 171281
-recovered pasa_asmbl_49828.p1, internal, 172199, 172468
-recovered pasa_asmbl_49828.p1, internal, 174114, 174547
-recovered pasa_asmbl_49828.p1, internal, 174723, 176253
Valid prediction for GeneMark_model.30596_t
Valid prediction for snap_scaffold_7-snap.1718-T1
Valid prediction for Augustus_model.g12260.t1
Valid prediction for Augustus_model.g12268.t1
Valid prediction for snap_scaffold_7-snap.1709-T1
Valid prediction for GeneMark_model.30588_t
Couldn't classify 106542, 106585
Sorry, prediction pasa_asmbl_49832.p1 fails validation.
(GCC)	 AG	106542-106585	GT	ATG
(TGA)	 AG	109495-109685	GT	AAG
(CTC)	 AG	109818-109888	GT	AGG
(GGC)	 AG	109980-110137	GT	CCG
(TAA)	 AG	110371-110515	GT	AGG
(GAG)	 AG	110779-110922	GT	AGG
(AAA)	 AG	111206-111499	GA	AAG
-recovered pasa_asmbl_49832.p1, terminal, 111206, 111499
-recovered pasa_asmbl_49832.p1, internal, 106542, 106585
-recovered pasa_asmbl_49832.p1, internal, 109495, 109685
-recovered pasa_asmbl_49832.p1, internal, 109818, 109888
-recovered pasa_asmbl_49832.p1, internal, 109980, 110137
-recovered pasa_asmbl_49832.p1, internal, 110371, 110515
-recovered pasa_asmbl_49832.p1, internal, 110779, 110922
Valid prediction for CodingQuarry_transcript_57420-T1
Valid prediction for CodingQuarry_transcript_57421-T1
Valid prediction for pasa_asmbl_49827.p1
Valid prediction for GlimmerHMM_glimmerT_18228-T1
Valid prediction for GlimmerHMM_glimmerT_18217-T1
Valid prediction for GeneMark_model.30585_t
Valid prediction for HiQ_model.g12272.t1
Valid prediction for GlimmerHMM_glimmerT_18227-T1
Valid prediction for pasa_asmbl_49839.p1
Valid prediction for GlimmerHMM_glimmerT_18229-T1
Valid prediction for GeneMark_model.30561_t
Valid prediction for snap_scaffold_7-snap.1740-T1
Valid prediction for Augustus_model.g12258.t1
Valid prediction for GeneMark_model.30598_t
Valid prediction for GeneMark_model.30574_t
Valid prediction for snap_scaffold_7-snap.1739-T1
Couldn't classify 29713, 29766
Sorry, prediction pasa_asmbl_49840.p1 fails validation.
(TTT)	 AC	29713-29766	GT	AGG
(GTC)	 AG	29865-29976	GT	GTG
(TCA)	 AG	30805-30887	GT	ACG
(TTC)	 AG	31552-31695	GT	AAG
(GTG)	 AG	31821-31913	GT	AGG
(GCG)	 AG	32204-32350	GT	AGG
(AGG)	 AG	32650-32813	GT	GTG
(TTT)	 AG	32950-33064	GT	AGG
(AAA)	 AG	33211-33312	GT	AGG
(GAG)	 AG	33406-33553	GT	CAG
(GGA)	 AG	33944-34002	GT	AGG
(GCT)	 AG	34114-34255	GT	AGG
(TGA)	 AG	34484-34691	GT	GGG
(GTA)	 AG	34994-35128	GT	AGG
(GTT)	 AG	35240-35306	GT	AGG
(AAC)	 AG	35858-36022	GA	GAG
-recovered pasa_asmbl_49840.p1, terminal, 35858, 36022
-recovered pasa_asmbl_49840.p1, internal, 29865, 29976
-recovered pasa_asmbl_49840.p1, internal, 30805, 30887
-recovered pasa_asmbl_49840.p1, internal, 31552, 31695
-recovered pasa_asmbl_49840.p1, internal, 31821, 31913
-recovered pasa_asmbl_49840.p1, internal, 32204, 32350
-recovered pasa_asmbl_49840.p1, internal, 32650, 32813
-recovered pasa_asmbl_49840.p1, internal, 32950, 33064
-recovered pasa_asmbl_49840.p1, internal, 33211, 33312
-recovered pasa_asmbl_49840.p1, internal, 33406, 33553
-recovered pasa_asmbl_49840.p1, internal, 33944, 34002
-recovered pasa_asmbl_49840.p1, internal, 34114, 34255
-recovered pasa_asmbl_49840.p1, internal, 34484, 34691
-recovered pasa_asmbl_49840.p1, internal, 34994, 35128
-recovered pasa_asmbl_49840.p1, internal, 35240, 35306

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 46668, rend_intergenic: 38329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80212, rend_intergenic: 77118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94313, rend_intergenic: 84454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194509
-exon list size: 626


building trellis

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49.2    
49.4    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.6    
50.8    
51.0    
51.1    
51.3    
51.4    
51.6    
51.8    
51.9    
52.1    
52.2    
52.4    
52.5    
52.7    
52.9    
53.0    
53.2    
53.3    
53.5    
53.7    
53.8    
54.0    
54.1    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.3    
55.4    
55.6    
55.7    
55.9    
56.1    
56.2    
56.4    
56.5    
56.7    
56.8    
57.0    
57.2    
57.3    
57.5    
57.6    
57.8    
58.0    
58.1    
58.3    
58.4    
58.6    
58.8    
58.9    
59.1    
59.2    
59.4    
59.6    
59.7    
59.9    
60.0    
60.2    
60.4    
60.5    
60.7    
60.8    
61.0    
61.1    
61.3    
61.5    
61.6    
61.8    
61.9    
62.1    
62.3    
62.4    
62.6    
62.7    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.9    
64.0    
64.2    
64.3    
64.5    
64.6    
64.8    
65.0    
65.1    
65.3    
65.4    
65.6    
65.8    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.0    
67.2    
67.4    
67.5    
67.7    
67.8    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.3    
69.4    
69.6    
69.7    
69.9    
70.1    
70.2    
70.4    
70.5    
70.7    
70.9    
71.0    
71.2    
71.3    
71.5    
71.7    
71.8    
72.0    
72.1    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.2    
73.4    
73.6    
73.7    
73.9    
74.0    
74.2    
74.4    
74.5    
74.7    
74.8    
75.0    
75.2    
75.3    
75.5    
75.6    
75.8    
76.0    
76.1    
76.3    
76.4    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.9    
78.0    
78.2    
78.3    
78.5    
78.7    
78.8    
79.0    
79.1    
79.3    
79.5    
79.6    
79.8    
79.9    
80.1    
80.3    
80.4    
80.6    
80.7    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.2    
82.3    
82.5    
82.6    
82.8    
83.0    
83.1    
83.3    
83.4    
83.6    
83.8    
83.9    
84.1    
84.2    
84.4    
84.6    
84.7    
84.9    
85.0    
85.2    
85.4    
85.5    
85.7    
85.8    
86.0    
86.1    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.3    
87.4    
87.6    
87.7    
87.9    
88.1    
88.2    
88.4    
88.5    
88.7    
88.9    
89.0    
89.2    
89.3    
89.5    
89.6    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.6    
91.7    
91.9    
92.0    
92.2    
92.4    
92.5    
92.7    
92.8    
93.0    
93.2    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.3    
94.4    
94.6    
94.7    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.9    
96.0    
96.2    
96.3    
96.5    
96.7    
96.8    
97.0    
97.1    
97.3    
97.5    
97.6    
97.8    
97.9    
98.1    
98.2    
98.4    
98.6    
98.7    
98.9    
99.0    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 46668, rend_intergenic: 38329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80212, rend_intergenic: 77118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94313, rend_intergenic: 84454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 177276 - 194509
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 179616 - 194509
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support