-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_7327332-7529042

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.30331_t
Valid prediction for Augustus_model.g12147.t1
Valid prediction for GlimmerHMM_glimmerT_18097-T1
Valid prediction for snap_scaffold_7-snap.1532-T1
Valid prediction for pasa_asmbl_50817.p1
Valid prediction for GeneMark_model.30339_t
Couldn't classify 131851, 131953
Couldn't classify 133731, 133793
Sorry, prediction CodingQuarry_transcript_57395-T1 fails validation.
(ATG)	 CC	131680-131749	GT	TGG
(ATG)	 AG	131851-131953	AT	ATA
(GTA)	 AC	133731-133793	GT	AGG
(GTA)	 AG	134830-134961	GT	ATG
(CCC)	 AG	135799-135946	GT	CAG
(TTC)	 AG	136313-136486	GT	AGG
(AAA)	 AG	137260-137376	GT	AGG
(ATC)	 AG	137881-138156	GT	CGG
(CTC)	 AG	138397-138477	GT	TGG
(CCT)	 AG	138636-138749	GT	ATG
(TCT)	 AG	139065-139180	GT	CAG
(GGA)	 AG	140273-140459	TC	AGT
-recovered CodingQuarry_transcript_57395-T1, initial, 131680, 131749
-recovered CodingQuarry_transcript_57395-T1, terminal, 140273, 140459
-recovered CodingQuarry_transcript_57395-T1, internal, 134830, 134961
-recovered CodingQuarry_transcript_57395-T1, internal, 135799, 135946
-recovered CodingQuarry_transcript_57395-T1, internal, 136313, 136486
-recovered CodingQuarry_transcript_57395-T1, internal, 137260, 137376
-recovered CodingQuarry_transcript_57395-T1, internal, 137881, 138156
-recovered CodingQuarry_transcript_57395-T1, internal, 138397, 138477
-recovered CodingQuarry_transcript_57395-T1, internal, 138636, 138749
-recovered CodingQuarry_transcript_57395-T1, internal, 139065, 139180
Valid prediction for snap_scaffold_7-snap.1526-T1
Valid prediction for GeneMark_model.30358_t
Valid prediction for snap_scaffold_7-snap.1517-T1
Valid prediction for Augustus_model.g12153.t1
Valid prediction for GeneMark_model.30336_t
Valid prediction for GeneMark_model.30353_t
Valid prediction for GeneMark_model.30327_t
Valid prediction for GeneMark_model.30344_t
Valid prediction for GlimmerHMM_glimmerT_18085-T1
Valid prediction for GlimmerHMM_glimmerT_18092-T1
Couldn't classify 131851, 131953
Couldn't classify 133731, 133793
Sorry, prediction pasa_asmbl_50811.p1 fails validation.
(ATG)	 CC	131680-131749	GT	TGG
(ATG)	 AG	131851-131953	AT	ATA
(GTA)	 AC	133731-133793	GT	AGG
(GTA)	 AG	134830-134961	GT	ATG
(CCC)	 AG	135799-135946	GT	CAG
(TTC)	 AG	136313-136486	GT	AGG
(AAA)	 AG	137260-137376	GT	AGG
(ATC)	 AG	137881-138156	GT	CGG
(CTC)	 AG	138397-138477	GT	TGG
(CCT)	 AG	138636-138749	GT	ATG
(TCT)	 AG	139065-139180	GT	CAG
(GGA)	 AG	140273-140459	TC	AGT
-recovered pasa_asmbl_50811.p1, initial, 131680, 131749
-recovered pasa_asmbl_50811.p1, terminal, 140273, 140459
-recovered pasa_asmbl_50811.p1, internal, 134830, 134961
-recovered pasa_asmbl_50811.p1, internal, 135799, 135946
-recovered pasa_asmbl_50811.p1, internal, 136313, 136486
-recovered pasa_asmbl_50811.p1, internal, 137260, 137376
-recovered pasa_asmbl_50811.p1, internal, 137881, 138156
-recovered pasa_asmbl_50811.p1, internal, 138397, 138477
-recovered pasa_asmbl_50811.p1, internal, 138636, 138749
-recovered pasa_asmbl_50811.p1, internal, 139065, 139180
Valid prediction for GlimmerHMM_glimmerT_18098-T1
Valid prediction for snap_scaffold_7-snap.1515-T1
Valid prediction for GeneMark_model.30360_t
Couldn't classify 149732, 149869
Sorry, prediction pasa_asmbl_50813.p1 fails validation.
(ATG)	 GA	147330-147367	GT	GGG
(TTA)	 AG	148021-148169	GT	TTG
(GTC)	 AG	148296-148430	GT	CAG
(CCT)	 AG	148725-148909	GT	AAG
(CTG)	 AG	149004-149084	GT	GGG
(GAA)	 AG	149183-149299	GT	AGG
(ACA)	 AG	149459-149626	GT	AGG
(ATT)	 AG	149732-149869	GG	GGG
-recovered pasa_asmbl_50813.p1, initial, 147330, 147367
-recovered pasa_asmbl_50813.p1, internal, 148021, 148169
-recovered pasa_asmbl_50813.p1, internal, 148296, 148430
-recovered pasa_asmbl_50813.p1, internal, 148725, 148909
-recovered pasa_asmbl_50813.p1, internal, 149004, 149084
-recovered pasa_asmbl_50813.p1, internal, 149183, 149299
-recovered pasa_asmbl_50813.p1, internal, 149459, 149626
Valid prediction for GeneMark_model.30361_t
Valid prediction for GeneMark_model.30333_t
Valid prediction for snap_scaffold_7-snap.1541-T1
Valid prediction for GlimmerHMM_glimmerT_18094-T1
Valid prediction for CodingQuarry_transcript_57393-T1
Valid prediction for GeneMark_model.30370_t
Valid prediction for GeneMark_model.30350_t
Valid prediction for GlimmerHMM_glimmerT_18084-T1
Valid prediction for Augustus_model.g12154.t1
Valid prediction for snap_scaffold_7-snap.1506-T1
Valid prediction for GeneMark_model.30346_t
Valid prediction for GlimmerHMM_glimmerT_18096-T1
Valid prediction for GeneMark_model.30324_t
Valid prediction for snap_scaffold_7-snap.1529-T1
Valid prediction for GlimmerHMM_glimmerT_18088-T1
Valid prediction for Augustus_model.g12155.t1
Valid prediction for snap_scaffold_7-snap.1512-T1
Valid prediction for snap_scaffold_7-snap.1509-T1
Valid prediction for GeneMark_model.30334_t
Valid prediction for GeneMark_model.30330_t
Valid prediction for Augustus_model.g12149.t1
Valid prediction for GeneMark_model.30326_t
Valid prediction for GlimmerHMM_glimmerT_18089-T1
Valid prediction for GlimmerHMM_glimmerT_18083-T1
Valid prediction for GeneMark_model.30368_t
Valid prediction for snap_scaffold_7-snap.1503-T1
Valid prediction for Augustus_model.g12148.t1
Couldn't classify 98294, 98418
Sorry, prediction pasa_asmbl_50806.p1 fails validation.
(ATG)	 GG	87694-87871	GT	TGG
(AGG)	 AG	90304-90390	GT	AGG
(AGG)	 AG	92823-92948	GT	AGG
(ATG)	 AG	93111-93236	GT	TGG
(ATG)	 AG	94153-94278	GT	AGG
(ACA)	 AG	94419-94538	GT	CGG
(ATA)	 AG	95831-95953	GT	AGG
(ATG)	 AG	96934-97056	GT	CGG
(ATG)	 AG	97604-97723	GT	AGG
(ACA)	 AG	98294-98418	GG	AAG
-recovered pasa_asmbl_50806.p1, initial, 87694, 87871
-recovered pasa_asmbl_50806.p1, initial, 93111, 93236
add_exon() Sorry, pasa_asmbl_50806.p1 94153-94278-initial-1 is invalid.
-recovered pasa_asmbl_50806.p1, initial, 94153, 94278
add_exon() Sorry, pasa_asmbl_50806.p1 96934-97056-initial-1 is invalid.
-recovered pasa_asmbl_50806.p1, initial, 96934, 97056
add_exon() Sorry, pasa_asmbl_50806.p1 97604-97723-initial-1 is invalid.
-recovered pasa_asmbl_50806.p1, initial, 97604, 97723
add_exon() Sorry, pasa_asmbl_50806.p1 92823-92948-terminal-1 is invalid.
-recovered pasa_asmbl_50806.p1, terminal, 92823, 92948
-recovered pasa_asmbl_50806.p1, internal, 90304, 90390
-recovered pasa_asmbl_50806.p1, internal, 92823, 92948
-recovered pasa_asmbl_50806.p1, internal, 93111, 93236
-recovered pasa_asmbl_50806.p1, internal, 94153, 94278
-recovered pasa_asmbl_50806.p1, internal, 94419, 94538
-recovered pasa_asmbl_50806.p1, internal, 95831, 95953
-recovered pasa_asmbl_50806.p1, internal, 96934, 97056
-recovered pasa_asmbl_50806.p1, internal, 97604, 97723
Valid prediction for GlimmerHMM_glimmerT_18091-T1
Valid prediction for snap_scaffold_7-snap.1535-T1
Valid prediction for GeneMark_model.30338_t
Valid prediction for GeneMark_model.30342_t
Valid prediction for Augustus_model.g12151.t1
Valid prediction for GeneMark_model.30357_t
Valid prediction for GlimmerHMM_glimmerT_18086-T1
Valid prediction for GeneMark_model.30348_t
Valid prediction for GeneMark_model.30363_t
Valid prediction for Augustus_model.g12158.t1
Valid prediction for GeneMark_model.30325_t
Valid prediction for Augustus_model.g12145.t1
Valid prediction for snap_scaffold_7-snap.1521-T1
Valid prediction for snap_scaffold_7-snap.1528-T1
Valid prediction for snap_scaffold_7-snap.1518-T1
Valid prediction for GeneMark_model.30352_t
Valid prediction for pasa_asmbl_50819.p1
Valid prediction for Augustus_model.g12157.t1
Valid prediction for GeneMark_model.30340_t
Valid prediction for Augustus_model.g12150.t1
Valid prediction for GeneMark_model.30362_t
Valid prediction for GeneMark_model.30322_t
Couldn't classify 32814, 33014
Sorry, prediction pasa_asmbl_50802.p1 fails validation.
(CAG)	 CG	32814-33014	GT	AGG
(GCG)	 AG	33537-33648	GT	CGG
(TGT)	 AG	35941-36041	GT	AGG
(CAA)	 AG	36291-36416	TT	GAT
-recovered pasa_asmbl_50802.p1, terminal, 36291, 36416
-recovered pasa_asmbl_50802.p1, internal, 33537, 33648
-recovered pasa_asmbl_50802.p1, internal, 35941, 36041
Valid prediction for snap_scaffold_7-snap.1533-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.1513-T1
Valid prediction for Augustus_model.g12144.t1
Valid prediction for snap_scaffold_7-snap.1511-T1
Couldn't classify 158374, 158577
Couldn't classify 159318, 159329
Sorry, prediction pasa_asmbl_50818.p1 fails validation.
(GGG)	 GG	158374-158577	GT	ATG
(CAG)	 AG	158764-158902	GT	AGG
(CCA)	 AG	159067-159143	GT	CGG
(GAG)	 AG	159318-159329	CT	AGC
-recovered pasa_asmbl_50818.p1, internal, 158764, 158902
-recovered pasa_asmbl_50818.p1, internal, 159067, 159143
Valid prediction for snap_scaffold_7-snap.1531-T1
Valid prediction for Augustus_model.g12146.t1
Valid prediction for snap_scaffold_7-snap.1508-T1
Valid prediction for snap_scaffold_7-snap.1534-T1
Valid prediction for Augustus_model.g12152.t1
Couldn't classify 74549, 74866
Couldn't classify 75811, 75912
Sorry, prediction pasa_asmbl_50804.p1 fails validation.
(GTC)	 TC	74549-74866	GT	AGG
(TGT)	 AG	75811-75912	TG	CAT
Couldn't classify 105481, 105622
Sorry, prediction pasa_asmbl_50807.p1 fails validation.
(GAT)	 CA	105481-105622	GT	AGG
(CCT)	 AG	107115-107276	GT	AGG
(ATC)	 AG	107651-107749	GT	AGG
(ACG)	 AG	108476-108604	GT	AGG
(ATA)	 AG	110296-110436	GT	AGG
(AGC)	 AG	110640-110807	GT	AGG
(AGG)	 AG	112532-112684	GT	GAG
(CAG)	 AG	113136-113288	GT	AGG
(ATG)	 AG	114852-115030	GC	GAG
add_exon() Sorry, pasa_asmbl_50807.p1 114852-115030-initial-1 is invalid.
-recovered pasa_asmbl_50807.p1, initial, 114852, 115030
add_exon() Sorry, pasa_asmbl_50807.p1 113136-113288-terminal-1 is invalid.
-recovered pasa_asmbl_50807.p1, terminal, 113136, 113288
-recovered pasa_asmbl_50807.p1, terminal, 114852, 115030
-recovered pasa_asmbl_50807.p1, internal, 107115, 107276
-recovered pasa_asmbl_50807.p1, internal, 107651, 107749
-recovered pasa_asmbl_50807.p1, internal, 108476, 108604
-recovered pasa_asmbl_50807.p1, internal, 110296, 110436
-recovered pasa_asmbl_50807.p1, internal, 110640, 110807
-recovered pasa_asmbl_50807.p1, internal, 112532, 112684
-recovered pasa_asmbl_50807.p1, internal, 113136, 113288
-recovered pasa_asmbl_50807.p1, internal, 114852, 115030
Valid prediction for GeneMark_model.30345_t
Couldn't classify 131851, 131953
Couldn't classify 133731, 133793
Sorry, prediction CodingQuarry_transcript_57396-T1 fails validation.
(ATG)	 CC	131680-131749	GT	TGG
(ATG)	 AG	131851-131953	AT	ATA
(GTA)	 AC	133731-133793	GT	AGG
(GTA)	 AG	134830-134961	GT	ATG
(CCC)	 AG	135799-135946	GT	CAG
(TTC)	 AG	136313-136486	GT	AGG
(AAA)	 AG	137260-137376	GT	AGG
(ATC)	 AG	137881-138156	GT	CGG
(CTC)	 AG	138397-138477	GT	TGG
(CCT)	 AG	138636-138749	GT	ATG
(TCT)	 AG	139065-139180	GT	CAG
(GGA)	 AG	140273-140420	GT	TTG
(CTG)	 AG	141846-141882	GT	AGG
(ACT)	 AG	142001-142150	GT	AGG
(ATG)	 AG	142249-142613	GT	AGG
(GAC)	 AG	143673-143681	CT	GAC
-recovered CodingQuarry_transcript_57396-T1, initial, 131680, 131749
add_exon() Sorry, CodingQuarry_transcript_57396-T1 142249-142613-initial-1 is invalid.
-recovered CodingQuarry_transcript_57396-T1, initial, 142249, 142613
-recovered CodingQuarry_transcript_57396-T1, terminal, 143673, 143681
-recovered CodingQuarry_transcript_57396-T1, internal, 134830, 134961
-recovered CodingQuarry_transcript_57396-T1, internal, 135799, 135946
-recovered CodingQuarry_transcript_57396-T1, internal, 136313, 136486
-recovered CodingQuarry_transcript_57396-T1, internal, 137260, 137376
-recovered CodingQuarry_transcript_57396-T1, internal, 137881, 138156
-recovered CodingQuarry_transcript_57396-T1, internal, 138397, 138477
-recovered CodingQuarry_transcript_57396-T1, internal, 138636, 138749
-recovered CodingQuarry_transcript_57396-T1, internal, 139065, 139180
-recovered CodingQuarry_transcript_57396-T1, internal, 140273, 140420
-recovered CodingQuarry_transcript_57396-T1, internal, 141846, 141882
-recovered CodingQuarry_transcript_57396-T1, internal, 142001, 142150
-recovered CodingQuarry_transcript_57396-T1, internal, 142249, 142613
Valid prediction for GeneMark_model.30355_t
Valid prediction for GlimmerHMM_glimmerT_18079-T1
Valid prediction for snap_scaffold_7-snap.1519-T1
Valid prediction for snap_scaffold_7-snap.1520-T1
Valid prediction for snap_scaffold_7-snap.1543-T1
Valid prediction for GlimmerHMM_glimmerT_18082-T1
Valid prediction for GlimmerHMM_glimmerT_18078-T1
Valid prediction for GlimmerHMM_glimmerT_18090-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1516-T1
Couldn't classify 33098, 33841
Sorry, prediction pasa_asmbl_49755.p1 fails validation.
(GCA)	 CA	33098-33841	GT	TGG
(GTA)	 AG	34417-34563	AC	AAA
-recovered pasa_asmbl_49755.p1, terminal, 34417, 34563
Valid prediction for GeneMark_model.30367_t
Valid prediction for snap_scaffold_7-snap.1504-T1
Couldn't classify 992, 1079
Sorry, prediction pasa_asmbl_49760.p1 fails validation.
(GCC)	 AG	992-1079	GT	AGG
(GAA)	 AG	1178-1332	GT	AGG
(GAG)	 AG	3214-3399	GT	AGG
(GTG)	 AG	3525-3653	GT	CTG
(ATC)	 AG	3990-4172	GT	AGG
(AAT)	 AG	4308-4404	GT	AGG
(GTA)	 AG	4496-4619	GT	TGG
(GTA)	 AG	4771-4945	GT	AGG
(CAT)	 AG	5110-5280	GT	AGG
(ATG)	 AG	5439-5548	GT	ACG
(GTA)	 AG	5687-5789	GT	AGG
(ACG)	 AG	6002-6127	GA	GAG
-recovered pasa_asmbl_49760.p1, initial, 5439, 5548
-recovered pasa_asmbl_49760.p1, terminal, 6002, 6127
-recovered pasa_asmbl_49760.p1, internal, 992, 1079
-recovered pasa_asmbl_49760.p1, internal, 1178, 1332
-recovered pasa_asmbl_49760.p1, internal, 3214, 3399
-recovered pasa_asmbl_49760.p1, internal, 3525, 3653
-recovered pasa_asmbl_49760.p1, internal, 3990, 4172
-recovered pasa_asmbl_49760.p1, internal, 4308, 4404
-recovered pasa_asmbl_49760.p1, internal, 4496, 4619
-recovered pasa_asmbl_49760.p1, internal, 4771, 4945
-recovered pasa_asmbl_49760.p1, internal, 5110, 5280
-recovered pasa_asmbl_49760.p1, internal, 5439, 5548
-recovered pasa_asmbl_49760.p1, internal, 5687, 5789
Valid prediction for HiQ_model.g12159.t1
Valid prediction for snap_scaffold_7-snap.1524-T1
Valid prediction for GeneMark_model.30351_t
Valid prediction for snap_scaffold_7-snap.1525-T1
Valid prediction for HiQ_model.g12162.t1
Valid prediction for Augustus_model.g12156.t1
Valid prediction for snap_scaffold_7-snap.1523-T1
Valid prediction for snap_scaffold_7-snap.1540-T1
Valid prediction for snap_scaffold_7-snap.1538-T1
Valid prediction for snap_scaffold_7-snap.1514-T1
Valid prediction for GlimmerHMM_glimmerT_18093-T1
Valid prediction for GlimmerHMM_glimmerT_18081-T1
Valid prediction for GeneMark_model.30364_t
Valid prediction for pasa_asmbl_49757.p1
Valid prediction for GlimmerHMM_glimmerT_18095-T1
Valid prediction for GeneMark_model.30337_t
Valid prediction for snap_scaffold_7-snap.1522-T1
Valid prediction for snap_scaffold_7-snap.1536-T1
Valid prediction for pasa_asmbl_49758.p1
Valid prediction for GeneMark_model.30354_t
Valid prediction for Augustus_model.g12161.t1
Valid prediction for GeneMark_model.30359_t
Valid prediction for snap_scaffold_7-snap.1510-T1
Valid prediction for snap_scaffold_7-snap.1507-T1
Valid prediction for GlimmerHMM_glimmerT_18099-T1
Valid prediction for snap_scaffold_7-snap.1537-T1
Valid prediction for GeneMark_model.30341_t
Valid prediction for snap_scaffold_7-snap.1505-T1
Valid prediction for GeneMark_model.30369_t
Valid prediction for GeneMark_model.30323_t
Valid prediction for GlimmerHMM_glimmerT_18080-T1
Valid prediction for GeneMark_model.30349_t
Valid prediction for GeneMark_model.30347_t
Valid prediction for GeneMark_model.30356_t
Valid prediction for snap_scaffold_7-snap.1527-T1
Valid prediction for GlimmerHMM_glimmerT_18100-T1
Valid prediction for GeneMark_model.30335_t
Valid prediction for GeneMark_model.30328_t
Valid prediction for GeneMark_model.30343_t
Valid prediction for GlimmerHMM_glimmerT_18102-T1
Valid prediction for CodingQuarry_transcript_57397-T1
Valid prediction for GlimmerHMM_glimmerT_18087-T1
Valid prediction for snap_scaffold_7-snap.1530-T1
Valid prediction for GeneMark_model.30371_t
Valid prediction for snap_scaffold_7-snap.1539-T1
Valid prediction for GeneMark_model.30329_t
Valid prediction for GlimmerHMM_glimmerT_18101-T1
Valid prediction for HiQ_model.g12160.t1
Valid prediction for GeneMark_model.30365_t
Valid prediction for GeneMark_model.30332_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 143144, rend_intergenic: 143141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20722, rend_intergenic: 17721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21541, rend_intergenic: 21394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27863, rend_intergenic: 21673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34055, rend_intergenic: 32736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71502, rend_intergenic: 69803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74294, rend_intergenic: 72466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113513, rend_intergenic: 102694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121653, rend_intergenic: 118065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140459, rend_intergenic: 137134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 201711
-exon list size: 656


building trellis

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10.5    
10.6    
10.8    
10.9    
11.1    
11.2    
11.4    
11.6    
11.7    
11.9    
12.0    
12.2    
12.3    
12.5    
12.6    
12.8    
12.9    
13.1    
13.2    
13.4    
13.5    
13.7    
13.8    
14.0    
14.1    
14.3    
14.4    
14.6    
14.7    
14.9    
15.0    
15.2    
15.3    
15.5    
15.7    
15.8    
16.0    
16.1    
16.3    
16.4    
16.6    
16.7    
16.9    
17.0    
17.2    
17.3    
17.5    
17.6    
17.8    
17.9    
18.1    
18.2    
18.4    
18.5    
18.7    
18.8    
19.0    
19.1    
19.3    
19.5    
19.6    
19.8    
19.9    
20.1    
20.2    
20.4    
20.5    
20.7    
20.8    
21.0    
21.1    
21.3    
21.4    
21.6    
21.7    
21.9    
22.0    
22.2    
22.3    
22.5    
22.6    
22.8    
22.9    
23.1    
23.3    
23.4    
23.6    
23.7    
23.9    
24.0    
24.2    
24.3    
24.5    
24.6    
24.8    
24.9    
25.1    
25.2    
25.4    
25.5    
25.7    
25.8    
26.0    
26.1    
26.3    
26.4    
26.6    
26.7    
26.9    
27.1    
27.2    
27.4    
27.5    
27.7    
27.8    
28.0    
28.1    
28.3    
28.4    
28.6    
28.7    
28.9    
29.0    
29.2    
29.3    
29.5    
29.6    
29.8    
29.9    
30.1    
30.2    
30.4    
30.5    
30.7    
30.9    
31.0    
31.2    
31.3    
31.5    
31.6    
31.8    
31.9    
32.1    
32.2    
32.4    
32.5    
32.7    
32.8    
33.0    
33.1    
33.3    
33.4    
33.6    
33.7    
33.9    
34.0    
34.2    
34.3    
34.5    
34.7    
34.8    
35.0    
35.1    
35.3    
35.4    
35.6    
35.7    
35.9    
36.0    
36.2    
36.3    
36.5    
36.6    
36.8    
36.9    
37.1    
37.2    
37.4    
37.5    
37.7    
37.8    
38.0    
38.1    
38.3    
38.4    
38.6    
38.8    
38.9    
39.1    
39.2    
39.4    
39.5    
39.7    
39.8    
40.0    
40.1    
40.3    
40.4    
40.6    
40.7    
40.9    
41.0    
41.2    
41.3    
41.5    
41.6    
41.8    
41.9    
42.1    
42.2    
42.4    
42.6    
42.7    
42.9    
43.0    
43.2    
43.3    
43.5    
43.6    
43.8    
43.9    
44.1    
44.2    
44.4    
44.5    
44.7    
44.8    
45.0    
45.1    
45.3    
45.4    
45.6    
45.7    
45.9    
46.0    
46.2    
46.4    
46.5    
46.7    
46.8    
47.0    
47.1    
47.3    
47.4    
47.6    
47.7    
47.9    
48.0    
48.2    
48.3    
48.5    
48.6    
48.8    
48.9    
49.1    
49.2    
49.4    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.6    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.7    
51.8    
52.0    
52.1    
52.3    
52.4    
52.6    
52.7    
52.9    
53.0    
53.2    
53.3    
53.5    
53.6    
53.8    
54.0    
54.1    
54.3    
54.4    
54.6    
54.7    
54.9    
55.0    
55.2    
55.3    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.4    
56.5    
56.7    
56.8    
57.0    
57.1    
57.3    
57.4    
57.6    
57.8    
57.9    
58.1    
58.2    
58.4    
58.5    
58.7    
58.8    
59.0    
59.1    
59.3    
59.4    
59.6    
59.7    
59.9    
60.0    
60.2    
60.3    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.4    
61.6    
61.7    
61.9    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.1    
64.3    
64.4    
64.6    
64.7    
64.9    
65.0    
65.2    
65.3    
65.5    
65.7    
65.8    
66.0    
66.1    
66.3    
66.4    
66.6    
66.7    
66.9    
67.0    
67.2    
67.3    
67.5    
67.6    
67.8    
67.9    
68.1    
68.2    
68.4    
68.5    
68.7    
68.8    
69.0    
69.1    
69.3    
69.5    
69.6    
69.8    
69.9    
70.1    
70.2    
70.4    
70.5    
70.7    
70.8    
71.0    
71.1    
71.3    
71.4    
71.6    
71.7    
71.9    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.3    
73.4    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.5    
75.7    
75.8    
76.0    
76.1    
76.3    
76.4    
76.6    
76.7    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.3    
78.4    
78.6    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.6    
79.8    
79.9    
80.1    
80.2    
80.4    
80.5    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.6    
81.8    
81.9    
82.1    
82.2    
82.4    
82.5    
82.7    
82.8    
83.0    
83.1    
83.3    
83.4    
83.6    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.6    
85.7    
85.9    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.2    
87.4    
87.5    
87.7    
87.8    
88.0    
88.1    
88.3    
88.4    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.7    
90.9    
91.0    
91.2    
91.3    
91.5    
91.6    
91.8    
91.9    
92.1    
92.2    
92.4    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.0    
96.2    
96.4    
96.5    
96.7    
96.8    
97.0    
97.1    
97.3    
97.4    
97.6    
97.7    
97.9    
98.0    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 30 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 143144, rend_intergenic: 143141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20722, rend_intergenic: 17721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21541, rend_intergenic: 21394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27863, rend_intergenic: 21673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34055, rend_intergenic: 32736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71502, rend_intergenic: 69803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74294, rend_intergenic: 72466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113513, rend_intergenic: 102694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121653, rend_intergenic: 118065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140459, rend_intergenic: 137134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support