-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_6316228-6477648

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.1350-T1
Valid prediction for snap_scaffold_7-snap.1339-T1
Valid prediction for GeneMark_model.30131_t
Valid prediction for Augustus_model.g12055.t1
Valid prediction for snap_scaffold_7-snap.1325-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.1351-T1
Valid prediction for Augustus_model.g12056.t1
Valid prediction for snap_scaffold_7-snap.1353-T1
Valid prediction for GlimmerHMM_glimmerT_17966-T1
Valid prediction for GeneMark_model.30125_t
Valid prediction for snap_scaffold_7-snap.1356-T1
Valid prediction for GlimmerHMM_glimmerT_17952-T1
Valid prediction for GlimmerHMM_glimmerT_17946-T1
Valid prediction for HiQ_model.g12058.t1
Valid prediction for GeneMark_model.30136_t
Valid prediction for snap_scaffold_7-snap.1334-T1
Valid prediction for snap_scaffold_7-snap.1335-T1
Valid prediction for snap_scaffold_7-snap.1347-T1
Valid prediction for GeneMark_model.30142_t
Valid prediction for GeneMark_model.30149_t
Valid prediction for GeneMark_model.30135_t
Valid prediction for GlimmerHMM_glimmerT_17965-T1
Valid prediction for GeneMark_model.30154_t
Valid prediction for snap_scaffold_7-snap.1343-T1
Valid prediction for GeneMark_model.30126_t
Valid prediction for GlimmerHMM_glimmerT_17963-T1
Valid prediction for GeneMark_model.30137_t
Valid prediction for Augustus_model.g12052.t1
Valid prediction for snap_scaffold_7-snap.1341-T1
Valid prediction for snap_scaffold_7-snap.1330-T1
Valid prediction for GeneMark_model.30144_t
Valid prediction for snap_scaffold_7-snap.1326-T1
Valid prediction for CodingQuarry_transcript_57377-T1
Valid prediction for GeneMark_model.30130_t
Valid prediction for GlimmerHMM_glimmerT_17948-T1
Valid prediction for GeneMark_model.30139_t
Valid prediction for GlimmerHMM_glimmerT_17953-T1
Valid prediction for GeneMark_model.30148_t
Valid prediction for GlimmerHMM_glimmerT_17962-T1
Valid prediction for GlimmerHMM_glimmerT_17951-T1
Valid prediction for GeneMark_model.30129_t
Valid prediction for GeneMark_model.30150_t
Valid prediction for GlimmerHMM_glimmerT_17967-T1
Valid prediction for GlimmerHMM_glimmerT_17955-T1
Valid prediction for GeneMark_model.30133_t
Valid prediction for GeneMark_model.30128_t
Valid prediction for snap_scaffold_7-snap.1344-T1
Valid prediction for pasa_asmbl_50747.p1
Valid prediction for snap_scaffold_7-snap.1332-T1
Valid prediction for GlimmerHMM_glimmerT_17958-T1
Valid prediction for GlimmerHMM_glimmerT_17945-T1
Valid prediction for GeneMark_model.30147_t
Valid prediction for snap_scaffold_7-snap.1357-T1
Valid prediction for GlimmerHMM_glimmerT_17950-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1346-T1
Valid prediction for GlimmerHMM_glimmerT_17961-T1
Valid prediction for snap_scaffold_7-snap.1327-T1
Valid prediction for snap_scaffold_7-snap.1342-T1
Valid prediction for snap_scaffold_7-snap.1349-T1
Valid prediction for snap_scaffold_7-snap.1329-T1
Valid prediction for snap_scaffold_7-snap.1345-T1
Valid prediction for GeneMark_model.30143_t
Valid prediction for GeneMark_model.30152_t
Valid prediction for GeneMark_model.30155_t
Valid prediction for GeneMark_model.30138_t
Valid prediction for GeneMark_model.30145_t
Valid prediction for snap_scaffold_7-snap.1352-T1
Valid prediction for GlimmerHMM_glimmerT_17960-T1
Valid prediction for GlimmerHMM_glimmerT_17956-T1
Valid prediction for Augustus_model.g12051.t1
Valid prediction for GeneMark_model.30153_t
Valid prediction for GeneMark_model.30132_t
Valid prediction for GeneMark_model.30151_t
Valid prediction for GlimmerHMM_glimmerT_17959-T1
Valid prediction for Augustus_model.g12057.t1
Valid prediction for Augustus_model.g12054.t1
Valid prediction for snap_scaffold_7-snap.1340-T1
Valid prediction for GeneMark_model.30140_t
Valid prediction for GlimmerHMM_glimmerT_17947-T1
Valid prediction for snap_scaffold_7-snap.1348-T1
Valid prediction for GeneMark_model.30127_t
Valid prediction for snap_scaffold_7-snap.1338-T1
Valid prediction for snap_scaffold_7-snap.1355-T1
Valid prediction for GeneMark_model.30134_t
Valid prediction for snap_scaffold_7-snap.1337-T1
Valid prediction for snap_scaffold_7-snap.1354-T1
Valid prediction for GeneMark_model.30141_t
Valid prediction for GlimmerHMM_glimmerT_17964-T1
Valid prediction for GeneMark_model.30146_t
Valid prediction for GlimmerHMM_glimmerT_17954-T1
Valid prediction for snap_scaffold_7-snap.1333-T1
Valid prediction for snap_scaffold_7-snap.1324-T1
Valid prediction for snap_scaffold_7-snap.1336-T1
Valid prediction for Augustus_model.g12053.t1
Valid prediction for snap_scaffold_7-snap.1331-T1
Valid prediction for GlimmerHMM_glimmerT_17957-T1
Valid prediction for GeneMark_model.30124_t
Valid prediction for Augustus_model.g12059.t1
Valid prediction for snap_scaffold_7-snap.1323-T1
Valid prediction for GlimmerHMM_glimmerT_17949-T1
Valid prediction for snap_scaffold_7-snap.1328-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17021, rend_intergenic: 15177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75469, rend_intergenic: 72861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76331, rend_intergenic: 75632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78948, rend_intergenic: 77064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161421
-exon list size: 399


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
2.0    
2.2    
2.5    
2.7    
3.0    
3.2    
3.5    
3.7    
4.0    
4.2    
4.5    
4.7    
5.0    
5.2    
5.5    
5.7    
6.0    
6.2    
6.5    
6.7    
7.0    
7.2    
7.5    
7.7    
8.0    
8.2    
8.5    
8.7    
9.0    
9.2    
9.5    
9.7    
10.0    
10.2    
10.5    
10.7    
11.0    
11.2    
11.5    
11.7    
12.0    
12.2    
12.5    
12.7    
13.0    
13.2    
13.5    
13.7    
14.0    
14.2    
14.5    
14.7    
15.0    
15.2    
15.5    
15.7    
16.0    
16.2    
16.5    
16.7    
17.0    
17.2    
17.5    
17.7    
18.0    
18.2    
18.5    
18.7    
19.0    
19.2    
19.5    
19.7    
20.0    
20.2    
20.4    
20.7    
20.9    
21.2    
21.4    
21.7    
21.9    
22.2    
22.4    
22.7    
22.9    
23.2    
23.4    
23.7    
23.9    
24.2    
24.4    
24.7    
24.9    
25.2    
25.4    
25.7    
25.9    
26.2    
26.4    
26.7    
26.9    
27.2    
27.4    
27.7    
27.9    
28.2    
28.4    
28.7    
28.9    
29.2    
29.4    
29.7    
29.9    
30.2    
30.4    
30.7    
30.9    
31.2    
31.4    
31.7    
31.9    
32.2    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.4    
34.7    
34.9    
35.2    
35.4    
35.7    
35.9    
36.2    
36.4    
36.7    
36.9    
37.2    
37.4    
37.7    
37.9    
38.2    
38.4    
38.7    
38.9    
39.2    
39.4    
39.7    
39.9    
40.1    
40.4    
40.6    
40.9    
41.1    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.9    
43.1    
43.4    
43.6    
43.9    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.9    
47.1    
47.4    
47.6    
47.9    
48.1    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.4    
51.6    
51.9    
52.1    
52.4    
52.6    
52.9    
53.1    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.1    
56.4    
56.6    
56.9    
57.1    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.9    
59.1    
59.4    
59.6    
59.9    
60.1    
60.3    
60.6    
60.8    
61.1    
61.3    
61.6    
61.8    
62.1    
62.3    
62.6    
62.8    
63.1    
63.3    
63.6    
63.8    
64.1    
64.3    
64.6    
64.8    
65.1    
65.3    
65.6    
65.8    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.6    
67.8    
68.1    
68.3    
68.6    
68.8    
69.1    
69.3    
69.6    
69.8    
70.1    
70.3    
70.6    
70.8    
71.1    
71.3    
71.6    
71.8    
72.1    
72.3    
72.6    
72.8    
73.1    
73.3    
73.6    
73.8    
74.1    
74.3    
74.6    
74.8    
75.1    
75.3    
75.6    
75.8    
76.1    
76.3    
76.6    
76.8    
77.1    
77.3    
77.6    
77.8    
78.1    
78.3    
78.6    
78.8    
79.1    
79.3    
79.6    
79.8    
80.0    
80.3    
80.5    
80.8    
81.0    
81.3    
81.5    
81.8    
82.0    
82.3    
82.5    
82.8    
83.0    
83.3    
83.5    
83.8    
84.0    
84.3    
84.5    
84.8    
85.0    
85.3    
85.5    
85.8    
86.0    
86.3    
86.5    
86.8    
87.0    
87.3    
87.5    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.3    
89.5    
89.8    
90.0    
90.3    
90.5    
90.8    
91.0    
91.3    
91.5    
91.8    
92.0    
92.3    
92.5    
92.8    
93.0    
93.3    
93.5    
93.8    
94.0    
94.3    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.0    
96.3    
96.5    
96.8    
97.0    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 17021, rend_intergenic: 15177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75469, rend_intergenic: 72861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76331, rend_intergenic: 75632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78948, rend_intergenic: 77064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support