-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_5636353-5818420

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g11995.t1
Valid prediction for GeneMark_model.29988_t
Valid prediction for snap_scaffold_7-snap.1205-T1
Valid prediction for GlimmerHMM_glimmerT_17860-T1
Valid prediction for GlimmerHMM_glimmerT_17865-T1
Valid prediction for Augustus_model.g11991.t1
Valid prediction for Augustus_model.g11993.t1
Valid prediction for GeneMark_model.30004_t
Valid prediction for snap_scaffold_7-snap.1200-T1
Valid prediction for pasa_asmbl_50707.p1
Valid prediction for GeneMark_model.29986_t
Valid prediction for snap_scaffold_7-snap.1204-T1
Valid prediction for snap_scaffold_7-snap.1193-T1
Valid prediction for Augustus_model.g11990.t1
Valid prediction for GlimmerHMM_glimmerT_17852-T1
Valid prediction for GeneMark_model.29997_t
Valid prediction for snap_scaffold_7-snap.1198-T1
Valid prediction for Augustus_model.g11987.t1
Valid prediction for snap_scaffold_7-snap.1208-T1
Valid prediction for GeneMark_model.30000_t
Valid prediction for GlimmerHMM_glimmerT_17853-T1
Valid prediction for Augustus_model.g11994.t1
Valid prediction for snap_scaffold_7-snap.1191-T1
Valid prediction for GeneMark_model.30007_t
Valid prediction for GlimmerHMM_glimmerT_17859-T1
Valid prediction for GeneMark_model.29995_t
Valid prediction for GlimmerHMM_glimmerT_17864-T1
Valid prediction for GeneMark_model.29984_t
Valid prediction for snap_scaffold_7-snap.1194-T1
Valid prediction for snap_scaffold_7-snap.1192-T1
Valid prediction for GeneMark_model.30009_t
Valid prediction for GeneMark_model.29999_t
Valid prediction for GlimmerHMM_glimmerT_17863-T1
Valid prediction for HiQ_model.g11989.t1
Valid prediction for GeneMark_model.29991_t
Valid prediction for GlimmerHMM_glimmerT_17858-T1
Valid prediction for snap_scaffold_7-snap.1203-T1
Valid prediction for GeneMark_model.29987_t
Valid prediction for GlimmerHMM_glimmerT_17849-T1
Valid prediction for snap_scaffold_7-snap.1187-T1
Valid prediction for GeneMark_model.30006_t
Valid prediction for GlimmerHMM_glimmerT_17857-T1
Valid prediction for GeneMark_model.29993_t
Valid prediction for Augustus_model.g11992.t1
Valid prediction for GeneMark_model.30002_t
Valid prediction for GlimmerHMM_glimmerT_17854-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.29990_t
Valid prediction for snap_scaffold_7-snap.1190-T1
Valid prediction for snap_scaffold_7-snap.1189-T1
Valid prediction for snap_scaffold_7-snap.1209-T1
Valid prediction for snap_scaffold_7-snap.1202-T1
Valid prediction for GlimmerHMM_glimmerT_17867-T1
Valid prediction for GeneMark_model.29996_t
Valid prediction for Augustus_model.g11998.t1
Valid prediction for GlimmerHMM_glimmerT_17866-T1
Valid prediction for GeneMark_model.30001_t
Valid prediction for Augustus_model.g11988.t1
Valid prediction for GlimmerHMM_glimmerT_17850-T1
Valid prediction for Augustus_model.g11996.t1
Valid prediction for GeneMark_model.29985_t
Valid prediction for GlimmerHMM_glimmerT_17856-T1
Valid prediction for snap_scaffold_7-snap.1206-T1
Valid prediction for GeneMark_model.29989_t
Valid prediction for snap_scaffold_7-snap.1195-T1
Valid prediction for snap_scaffold_7-snap.1210-T1
Valid prediction for snap_scaffold_7-snap.1197-T1
Valid prediction for GlimmerHMM_glimmerT_17851-T1
Valid prediction for snap_scaffold_7-snap.1199-T1
Valid prediction for snap_scaffold_7-snap.1207-T1
Valid prediction for GlimmerHMM_glimmerT_17862-T1
Valid prediction for GeneMark_model.29994_t
Valid prediction for GeneMark_model.29992_t
Valid prediction for GlimmerHMM_glimmerT_17868-T1
Valid prediction for GeneMark_model.30008_t
Valid prediction for GeneMark_model.29998_t
Valid prediction for snap_scaffold_7-snap.1196-T1
Valid prediction for GlimmerHMM_glimmerT_17861-T1
Valid prediction for GeneMark_model.30010_t
Valid prediction for GeneMark_model.30005_t
Valid prediction for GeneMark_model.30011_t
Valid prediction for Augustus_model.g11997.t1
Valid prediction for snap_scaffold_7-snap.1188-T1
Valid prediction for GlimmerHMM_glimmerT_17855-T1
Valid prediction for GeneMark_model.30003_t
Valid prediction for snap_scaffold_7-snap.1201-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 123609, rend_intergenic: 121754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147039, rend_intergenic: 143734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173040, rend_intergenic: 172409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182068
-exon list size: 303


building trellis

0.3    
0.7    
1.0    
1.3    
1.6    
2.0    
2.3    
2.6    
3.0    
3.3    
3.6    
3.9    
4.3    
4.6    
4.9    
5.2    
5.6    
5.9    
6.2    
6.6    
6.9    
7.2    
7.5    
7.9    
8.2    
8.5    
8.9    
9.2    
9.5    
9.8    
10.2    
10.5    
10.8    
11.1    
11.5    
11.8    
12.1    
12.5    
12.8    
13.1    
13.4    
13.8    
14.1    
14.4    
14.8    
15.1    
15.4    
15.7    
16.1    
16.4    
16.7    
17.0    
17.4    
17.7    
18.0    
18.4    
18.7    
19.0    
19.3    
19.7    
20.0    
20.3    
20.7    
21.0    
21.3    
21.6    
22.0    
22.3    
22.6    
23.0    
23.3    
23.6    
23.9    
24.3    
24.6    
24.9    
25.2    
25.6    
25.9    
26.2    
26.6    
26.9    
27.2    
27.5    
27.9    
28.2    
28.5    
28.9    
29.2    
29.5    
29.8    
30.2    
30.5    
30.8    
31.1    
31.5    
31.8    
32.1    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.8    
35.1    
35.4    
35.7    
36.1    
36.4    
36.7    
37.0    
37.4    
37.7    
38.0    
38.4    
38.7    
39.0    
39.3    
39.7    
40.0    
40.3    
40.7    
41.0    
41.3    
41.6    
42.0    
42.3    
42.6    
43.0    
43.3    
43.6    
43.9    
44.3    
44.6    
44.9    
45.2    
45.6    
45.9    
46.2    
46.6    
46.9    
47.2    
47.5    
47.9    
48.2    
48.5    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.5    
51.8    
52.1    
52.5    
52.8    
53.1    
53.4    
53.8    
54.1    
54.4    
54.8    
55.1    
55.4    
55.7    
56.1    
56.4    
56.7    
57.0    
57.4    
57.7    
58.0    
58.4    
58.7    
59.0    
59.3    
59.7    
60.0    
60.3    
60.7    
61.0    
61.3    
61.6    
62.0    
62.3    
62.6    
63.0    
63.3    
63.6    
63.9    
64.3    
64.6    
64.9    
65.2    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.9    
68.2    
68.5    
68.9    
69.2    
69.5    
69.8    
70.2    
70.5    
70.8    
71.1    
71.5    
71.8    
72.1    
72.5    
72.8    
73.1    
73.4    
73.8    
74.1    
74.4    
74.8    
75.1    
75.4    
75.7    
76.1    
76.4    
76.7    
77.0    
77.4    
77.7    
78.0    
78.4    
78.7    
79.0    
79.3    
79.7    
80.0    
80.3    
80.7    
81.0    
81.3    
81.6    
82.0    
82.3    
82.6    
83.0    
83.3    
83.6    
83.9    
84.3    
84.6    
84.9    
85.2    
85.6    
85.9    
86.2    
86.6    
86.9    
87.2    
87.5    
87.9    
88.2    
88.5    
88.9    
89.2    
89.5    
89.8    
90.2    
90.5    
90.8    
91.1    
91.5    
91.8    
92.1    
92.5    
92.8    
93.1    
93.4    
93.8    
94.1    
94.4    
94.8    
95.1    
95.4    
95.7    
96.1    
96.4    
96.7    
97.0    
97.4    
97.7    
98.0    
98.4    
98.7    
99.0    
99.3    
99.7    
-found 15 predictions from path traversal
Error with prediction: snap lend_intergenic: 123609, rend_intergenic: 121754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147039, rend_intergenic: 143734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173040, rend_intergenic: 172409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support