-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_5326090-5638663

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.1166-T1
Valid prediction for snap_scaffold_7-snap.1156-T1
Valid prediction for GlimmerHMM_glimmerT_17830-T1
Valid prediction for Augustus_model.g11986.t1
Valid prediction for GlimmerHMM_glimmerT_17816-T1
Valid prediction for GeneMark_model.29975_t
Valid prediction for snap_scaffold_7-snap.1173-T1
Valid prediction for snap_scaffold_7-snap.1159-T1
Valid prediction for snap_scaffold_7-snap.1163-T1
Valid prediction for GeneMark_model.29952_t
Valid prediction for snap_scaffold_7-snap.1186-T1
Valid prediction for snap_scaffold_7-snap.1174-T1
Couldn't classify 226650, 226712
Couldn't classify 228380, 228403
Sorry, prediction pasa_asmbl_50700.p1 fails validation.
(CAG)	 AC	226650-226712	GT	TGG
(AAT)	 AG	226808-226910	GT	AGG
(GCT)	 AG	227679-227815	GT	AGG
(CGC)	 AG	227908-228072	GT	TAG
(GGG)	 AG	228380-228403	AG	CCA
-recovered pasa_asmbl_50700.p1, internal, 226808, 226910
-recovered pasa_asmbl_50700.p1, internal, 227679, 227815
-recovered pasa_asmbl_50700.p1, internal, 227908, 228072
Valid prediction for GlimmerHMM_glimmerT_17838-T1
Valid prediction for Augustus_model.g11980.t1
Valid prediction for GlimmerHMM_glimmerT_17839-T1
Valid prediction for GeneMark_model.29939_t
Valid prediction for GeneMark_model.29948_t
Valid prediction for GlimmerHMM_glimmerT_17841-T1
Couldn't classify 240425, 240499
Sorry, prediction pasa_asmbl_50703.p1 fails validation.
(ATG)	 CC	237457-237501	GT	AGG
(GTG)	 AG	237755-237780	GT	AGG
(CAT)	 AG	238115-238687	GT	AGG
(TGT)	 AG	238767-238899	GT	GAG
(ACA)	 AG	239830-239952	GT	AGG
(GAA)	 AG	240085-240156	GT	AGG
(GAT)	 AG	240425-240499	GT	AGG
-recovered pasa_asmbl_50703.p1, initial, 237457, 237501
-recovered pasa_asmbl_50703.p1, terminal, 237755, 237780
-recovered pasa_asmbl_50703.p1, internal, 237755, 237780
-recovered pasa_asmbl_50703.p1, internal, 238115, 238687
-recovered pasa_asmbl_50703.p1, internal, 238767, 238899
-recovered pasa_asmbl_50703.p1, internal, 239830, 239952
-recovered pasa_asmbl_50703.p1, internal, 240085, 240156
-recovered pasa_asmbl_50703.p1, internal, 240425, 240499
Valid prediction for GeneMark_model.29931_t
Couldn't classify 230192, 230245
Couldn't classify 233051, 233057
Sorry, prediction pasa_asmbl_50701.p1 fails validation.
(AAG)	 TC	230192-230245	GT	TGG
(CTC)	 AG	230573-230738	GT	AGG
(TGT)	 AG	231212-231288	GT	AGG
(GAG)	 AG	231520-231618	GT	AAG
(GTA)	 AG	231747-231875	GT	AGG
(GGT)	 AG	232210-232365	GT	TGG
(TGC)	 AG	232462-232553	GT	AGG
(AGT)	 AG	232647-232817	GT	ACG
(CTC)	 AG	233051-233057	AT	GGA
-recovered pasa_asmbl_50701.p1, internal, 230573, 230738
-recovered pasa_asmbl_50701.p1, internal, 231212, 231288
-recovered pasa_asmbl_50701.p1, internal, 231520, 231618
-recovered pasa_asmbl_50701.p1, internal, 231747, 231875
-recovered pasa_asmbl_50701.p1, internal, 232210, 232365
-recovered pasa_asmbl_50701.p1, internal, 232462, 232553
-recovered pasa_asmbl_50701.p1, internal, 232647, 232817
Valid prediction for snap_scaffold_7-snap.1143-T1
Valid prediction for snap_scaffold_7-snap.1150-T1
Valid prediction for GeneMark_model.29957_t
Valid prediction for Augustus_model.g11982.t1
Valid prediction for GlimmerHMM_glimmerT_17840-T1
Valid prediction for GeneMark_model.29966_t
Valid prediction for snap_scaffold_7-snap.1142-T1
Valid prediction for snap_scaffold_7-snap.1158-T1
Valid prediction for GlimmerHMM_glimmerT_17826-T1
Valid prediction for snap_scaffold_7-snap.1175-T1
Valid prediction for snap_scaffold_7-snap.1160-T1
Valid prediction for snap_scaffold_7-snap.1147-T1
Couldn't classify 154977, 155100
Sorry, prediction pasa_asmbl_50698.p1 fails validation.
(GAC)	 CA	154977-155100	GT	GGG
(ACA)	 AG	155323-155442	GT	GGG
(ACT)	 AG	156298-156417	GT	AGG
(ACA)	 AG	156532-156651	GT	AGG
(ACA)	 AG	157976-158102	GT	AAG
(CCG)	 AG	158219-158411	GT	GGG
(CGT)	 AG	158495-158656	AG	GAA
-recovered pasa_asmbl_50698.p1, terminal, 158495, 158656
-recovered pasa_asmbl_50698.p1, internal, 155323, 155442
-recovered pasa_asmbl_50698.p1, internal, 156298, 156417
-recovered pasa_asmbl_50698.p1, internal, 156532, 156651
-recovered pasa_asmbl_50698.p1, internal, 157976, 158102
-recovered pasa_asmbl_50698.p1, internal, 158219, 158411
Valid prediction for Augustus_model.g11968.t1
Valid prediction for Augustus_model.g11966.t1
Valid prediction for Augustus_model.g11961.t1
Valid prediction for GeneMark_model.29933_t
Valid prediction for Augustus_model.g11969.t1
Valid prediction for GeneMark_model.29977_t
Valid prediction for GeneMark_model.29958_t
Valid prediction for GlimmerHMM_glimmerT_17823-T1
Valid prediction for GlimmerHMM_glimmerT_17833-T1
Valid prediction for GlimmerHMM_glimmerT_17843-T1
Valid prediction for snap_scaffold_7-snap.1177-T1
Valid prediction for GlimmerHMM_glimmerT_17831-T1
Valid prediction for GeneMark_model.29934_t
Valid prediction for CodingQuarry_transcript_57358-T1
Couldn't classify 249762, 249825
Couldn't classify 252308, 252457
Sorry, prediction pasa_asmbl_50705.p1 fails validation.
(TCT)	 CT	249762-249825	GT	CAG
(AAC)	 AG	249956-250016	GT	AGG
(CTC)	 AG	250380-250455	GT	AGG
(GTG)	 AG	252308-252457	GA	GTG
-recovered pasa_asmbl_50705.p1, internal, 249956, 250016
-recovered pasa_asmbl_50705.p1, internal, 250380, 250455
Valid prediction for GlimmerHMM_glimmerT_17820-T1
Valid prediction for snap_scaffold_7-snap.1162-T1
Valid prediction for snap_scaffold_7-snap.1179-T1
Valid prediction for snap_scaffold_7-snap.1176-T1
Valid prediction for GeneMark_model.29953_t
Valid prediction for snap_scaffold_7-snap.1171-T1
Valid prediction for GlimmerHMM_glimmerT_17827-T1
Valid prediction for GlimmerHMM_glimmerT_17848-T1
Valid prediction for GeneMark_model.29950_t
Valid prediction for Augustus_model.g11978.t1
Valid prediction for Augustus_model.g11973.t1
Valid prediction for CodingQuarry_transcript_57356-T1
Valid prediction for Augustus_model.g11972.t1
Valid prediction for GeneMark_model.29946_t
Valid prediction for GeneMark_model.29973_t
Couldn't classify 255960, 256039
Sorry, prediction pasa_asmbl_50706.p1 fails validation.
(GGT)	 CA	255960-256039	GT	AGG
(AGA)	 AG	256194-256302	GT	AGG
(GCA)	 AG	257093-257198	GT	AGG
(CCC)	 AG	258666-258794	GT	CGG
(GGA)	 AG	259527-259690	TG	AAT
-recovered pasa_asmbl_50706.p1, terminal, 259527, 259690
-recovered pasa_asmbl_50706.p1, internal, 256194, 256302
-recovered pasa_asmbl_50706.p1, internal, 257093, 257198
-recovered pasa_asmbl_50706.p1, internal, 258666, 258794
Valid prediction for snap_scaffold_7-snap.1165-T1
Valid prediction for GeneMark_model.29968_t
Valid prediction for GlimmerHMM_glimmerT_17829-T1
Valid prediction for Augustus_model.g11979.t1
Couldn't classify 233112, 233199
Sorry, prediction pasa_asmbl_50702.p1 fails validation.
(AAG)	 CC	233112-233199	GT	TGG
(AGA)	 AG	233504-233643	GT	AGG
(GGA)	 AG	233899-233987	GT	AAG
(TTA)	 AG	234085-234180	GT	GGG
(ATG)	 AG	234257-234398	GT	AAG
(GAG)	 AG	234491-234590	GT	AGG
(GCA)	 AG	234723-234916	GT	GTG
(GGA)	 AG	234999-235108	GT	AAG
(TCG)	 AG	235724-235871	GT	CGG
(AAC)	 AG	235968-236006	AA	AGA
add_exon() Sorry, pasa_asmbl_50702.p1 234257-234398-initial-1 is invalid.
-recovered pasa_asmbl_50702.p1, initial, 234257, 234398
add_exon() Sorry, pasa_asmbl_50702.p1 234491-234590-terminal-3 is invalid.
-recovered pasa_asmbl_50702.p1, terminal, 234491, 234590
-recovered pasa_asmbl_50702.p1, terminal, 235968, 236006
-recovered pasa_asmbl_50702.p1, internal, 233504, 233643
-recovered pasa_asmbl_50702.p1, internal, 233899, 233987
-recovered pasa_asmbl_50702.p1, internal, 234085, 234180
-recovered pasa_asmbl_50702.p1, internal, 234257, 234398
-recovered pasa_asmbl_50702.p1, internal, 234491, 234590
-recovered pasa_asmbl_50702.p1, internal, 234723, 234916
-recovered pasa_asmbl_50702.p1, internal, 234999, 235108
-recovered pasa_asmbl_50702.p1, internal, 235724, 235871
Valid prediction for GlimmerHMM_glimmerT_17832-T1
Valid prediction for GlimmerHMM_glimmerT_17842-T1
Valid prediction for CodingQuarry_transcript_57357-T1
Couldn't classify 145172, 145452
Sorry, prediction pasa_asmbl_50696.p2 fails validation.
(ATG)	 CA	144570-144650	GT	CAG
(TGC)	 AG	144862-144907	GT	GGG
(ATA)	 AG	145172-145452	GG	GAG
-recovered pasa_asmbl_50696.p2, initial, 144570, 144650
-recovered pasa_asmbl_50696.p2, internal, 144862, 144907
Valid prediction for Augustus_model.g11967.t1
Valid prediction for GeneMark_model.29960_t
Valid prediction for GlimmerHMM_glimmerT_17821-T1
Valid prediction for snap_scaffold_7-snap.1180-T1
Valid prediction for GeneMark_model.29971_t
Valid prediction for Augustus_model.g11970.t1
Valid prediction for GeneMark_model.29983_t
Valid prediction for snap_scaffold_7-snap.1172-T1
Valid prediction for GeneMark_model.29936_t
Valid prediction for GeneMark_model.29943_t
Valid prediction for GeneMark_model.29979_t
Valid prediction for Augustus_model.g11981.t1
Valid prediction for GeneMark_model.29940_t
Valid prediction for GeneMark_model.29969_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_17845-T1
Valid prediction for GeneMark_model.29964_t
Valid prediction for GeneMark_model.29937_t
Valid prediction for GeneMark_model.29942_t
Valid prediction for GeneMark_model.29963_t
Valid prediction for snap_scaffold_7-snap.1170-T1
Valid prediction for GlimmerHMM_glimmerT_17822-T1
Valid prediction for Augustus_model.g11962.t1
Valid prediction for GeneMark_model.29932_t
Valid prediction for Augustus_model.g11974.t1
Valid prediction for GeneMark_model.29972_t
Valid prediction for GeneMark_model.29967_t
Valid prediction for GeneMark_model.29935_t
Valid prediction for Augustus_model.g11985.t1
Valid prediction for snap_scaffold_7-snap.1149-T1
Valid prediction for GeneMark_model.29947_t
Valid prediction for GeneMark_model.29954_t
Valid prediction for GlimmerHMM_glimmerT_17819-T1
Valid prediction for snap_scaffold_7-snap.1182-T1
Valid prediction for snap_scaffold_7-snap.1181-T1
Valid prediction for snap_scaffold_7-snap.1183-T1
Couldn't classify 99726, 99809
Couldn't classify 100680, 100793
Sorry, prediction pasa_asmbl_49704.p1 fails validation.
(GAG)	 AA	99726-99809	GT	AGG
(GTC)	 AG	99930-100001	GT	AGG
(ATC)	 AG	100360-100485	GT	AGG
(AGA)	 AG	100680-100793	GA	ACG
-recovered pasa_asmbl_49704.p1, internal, 99930, 100001
-recovered pasa_asmbl_49704.p1, internal, 100360, 100485
Valid prediction for GlimmerHMM_glimmerT_17835-T1
Valid prediction for Augustus_model.g11971.t1
Valid prediction for snap_scaffold_7-snap.1152-T1
Valid prediction for GeneMark_model.29956_t
Valid prediction for Augustus_model.g11983.t1
Valid prediction for snap_scaffold_7-snap.1164-T1
Couldn't classify 291491, 291874
Sorry, prediction pasa_asmbl_49698.p1 fails validation.
(CCT)	 TG	291491-291874	GT	AGG
(GTG)	 AG	291961-292083	GT	AGG
(GTC)	 AG	292268-292414	GT	AGG
(GTG)	 AG	292647-293168	GT	AGG
(GTG)	 AG	293280-293384	GT	AGG
(GTG)	 AG	293544-293726	AC	AAA
-recovered pasa_asmbl_49698.p1, terminal, 293544, 293726
-recovered pasa_asmbl_49698.p1, internal, 291961, 292083
-recovered pasa_asmbl_49698.p1, internal, 292268, 292414
-recovered pasa_asmbl_49698.p1, internal, 292647, 293168
-recovered pasa_asmbl_49698.p1, internal, 293280, 293384
Valid prediction for GeneMark_model.29949_t
Valid prediction for GeneMark_model.29970_t
Valid prediction for GlimmerHMM_glimmerT_17817-T1
Valid prediction for GeneMark_model.29944_t
Valid prediction for snap_scaffold_7-snap.1154-T1
Valid prediction for GeneMark_model.29982_t
Valid prediction for Augustus_model.g11963.t1
Valid prediction for snap_scaffold_7-snap.1155-T1
Valid prediction for GeneMark_model.29978_t
Valid prediction for GeneMark_model.29974_t
Valid prediction for snap_scaffold_7-snap.1167-T1
Valid prediction for GlimmerHMM_glimmerT_17846-T1
Valid prediction for Augustus_model.g11977.t1
Valid prediction for GlimmerHMM_glimmerT_17818-T1
Valid prediction for GeneMark_model.29945_t
Valid prediction for GlimmerHMM_glimmerT_17828-T1
Valid prediction for GeneMark_model.29938_t
Valid prediction for GlimmerHMM_glimmerT_17824-T1
Valid prediction for snap_scaffold_7-snap.1145-T1
Valid prediction for Augustus_model.g11965.t1
Valid prediction for snap_scaffold_7-snap.1151-T1
Valid prediction for snap_scaffold_7-snap.1144-T1
Couldn't classify 117417, 117544
Sorry, prediction pasa_asmbl_49702.p1 fails validation.
(CTT)	 TA	117417-117544	GT	TTG
(ATC)	 AG	117762-117833	GT	CTG
(TCT)	 AG	118546-118617	GT	CTG
(ATT)	 AG	118703-118774	GT	CTG
(GAG)	 AG	119498-119569	GT	GTG
(AGA)	 AG	120149-120318	GT	AGG
(AGT)	 AG	120643-120807	GT	TAG
(GCA)	 AG	120904-121721	TC	GAT
-recovered pasa_asmbl_49702.p1, terminal, 120904, 121721
-recovered pasa_asmbl_49702.p1, internal, 117762, 117833
-recovered pasa_asmbl_49702.p1, internal, 118546, 118617
-recovered pasa_asmbl_49702.p1, internal, 118703, 118774
-recovered pasa_asmbl_49702.p1, internal, 119498, 119569
-recovered pasa_asmbl_49702.p1, internal, 120149, 120318
-recovered pasa_asmbl_49702.p1, internal, 120643, 120807
Valid prediction for GlimmerHMM_glimmerT_17825-T1
Valid prediction for GeneMark_model.29980_t
Valid prediction for snap_scaffold_7-snap.1178-T1
Valid prediction for snap_scaffold_7-snap.1168-T1
Valid prediction for snap_scaffold_7-snap.1161-T1
Valid prediction for Augustus_model.g11984.t1
Valid prediction for snap_scaffold_7-snap.1184-T1
Valid prediction for snap_scaffold_7-snap.1157-T1
Valid prediction for GeneMark_model.29961_t
Valid prediction for snap_scaffold_7-snap.1169-T1
Valid prediction for Augustus_model.g11975.t1
Valid prediction for snap_scaffold_7-snap.1148-T1
Valid prediction for GeneMark_model.29976_t
Valid prediction for GlimmerHMM_glimmerT_17836-T1
Valid prediction for GlimmerHMM_glimmerT_17844-T1
Valid prediction for snap_scaffold_7-snap.1185-T1
Valid prediction for snap_scaffold_7-snap.1153-T1
Valid prediction for GeneMark_model.29959_t
Valid prediction for snap_scaffold_7-snap.1146-T1
Couldn't classify 208606, 208651
Sorry, prediction pasa_asmbl_49701.p1 fails validation.
(GTG)	 AG	208606-208651	GT	AGG
(GTG)	 AG	210191-210261	GT	GGG
(GTG)	 AG	210937-211035	GT	AGG
(GAG)	 AG	211894-212068	GT	GGG
(TGG)	 AG	212258-212439	GT	AGG
(ATG)	 AG	212561-212725	GT	CGG
(GTC)	 AG	215219-215402	GT	TGG
(CCA)	 AG	217422-217532	GT	AGG
(ATG)	 AG	217654-217778	GT	AGG
(TCT)	 AG	218199-218622	GT	CGG
(TGT)	 AG	219429-220282	GT	CGG
(GGC)	 AG	221264-221401	GT	AGG
(GTC)	 AG	221727-221860	GT	TGG
(GAC)	 AG	222317-222483	GT	CGG
(GTG)	 AG	222876-223075	GT	GGG
(CTG)	 AG	224630-224671	GG	AAG
-recovered pasa_asmbl_49701.p1, initial, 212561, 212725
-recovered pasa_asmbl_49701.p1, initial, 217654, 217778
-recovered pasa_asmbl_49701.p1, terminal, 224630, 224671
-recovered pasa_asmbl_49701.p1, internal, 208606, 208651
-recovered pasa_asmbl_49701.p1, internal, 210191, 210261
-recovered pasa_asmbl_49701.p1, internal, 210937, 211035
-recovered pasa_asmbl_49701.p1, internal, 211894, 212068
-recovered pasa_asmbl_49701.p1, internal, 212258, 212439
-recovered pasa_asmbl_49701.p1, internal, 212561, 212725
-recovered pasa_asmbl_49701.p1, internal, 215219, 215402
-recovered pasa_asmbl_49701.p1, internal, 217422, 217532
-recovered pasa_asmbl_49701.p1, internal, 217654, 217778
-recovered pasa_asmbl_49701.p1, internal, 218199, 218622
-recovered pasa_asmbl_49701.p1, internal, 219429, 220282
-recovered pasa_asmbl_49701.p1, internal, 221264, 221401
-recovered pasa_asmbl_49701.p1, internal, 221727, 221860
-recovered pasa_asmbl_49701.p1, internal, 222317, 222483
-recovered pasa_asmbl_49701.p1, internal, 222876, 223075
Valid prediction for GlimmerHMM_glimmerT_17847-T1
Valid prediction for GeneMark_model.29951_t
Valid prediction for GlimmerHMM_glimmerT_17834-T1
Valid prediction for GlimmerHMM_glimmerT_17837-T1
Valid prediction for GeneMark_model.29965_t
Valid prediction for Augustus_model.g11964.t1
Valid prediction for Augustus_model.g11976.t1
Valid prediction for GeneMark_model.29962_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15160, rend_intergenic: 8207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34855, rend_intergenic: 32982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72346, rend_intergenic: 66913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177043, rend_intergenic: 169055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 258185, rend_intergenic: 250890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 312574
-exon list size: 838


building trellis

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18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.2    
19.3    
19.4    
19.5    
19.6    
19.8    
19.9    
20.0    
20.1    
20.2    
20.4    
20.5    
20.6    
20.7    
20.8    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.7    
21.8    
21.9    
22.0    
22.1    
22.3    
22.4    
22.5    
22.6    
22.7    
22.9    
23.0    
23.1    
23.2    
23.3    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.2    
24.3    
24.4    
24.5    
24.6    
24.8    
24.9    
25.0    
25.1    
25.2    
25.4    
25.5    
25.6    
25.7    
25.8    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.7    
26.8    
26.9    
27.0    
27.1    
27.3    
27.4    
27.5    
27.6    
27.7    
27.9    
28.0    
28.1    
28.2    
28.3    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.2    
29.3    
29.4    
29.5    
29.6    
29.8    
29.9    
30.0    
30.1    
30.2    
30.4    
30.5    
30.6    
30.7    
30.8    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.7    
31.8    
31.9    
32.0    
32.1    
32.3    
32.4    
32.5    
32.6    
32.7    
32.9    
33.0    
33.1    
33.2    
33.3    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.2    
34.3    
34.4    
34.5    
34.6    
34.8    
34.9    
35.0    
35.1    
35.2    
35.4    
35.5    
35.6    
35.7    
35.8    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.7    
36.8    
36.9    
37.0    
37.1    
37.3    
37.4    
37.5    
37.6    
37.7    
37.9    
38.0    
38.1    
38.2    
38.3    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.2    
39.3    
39.4    
39.5    
39.6    
39.8    
39.9    
40.0    
40.1    
40.2    
40.4    
40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.7    
41.8    
41.9    
42.0    
42.1    
42.3    
42.4    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.2    
43.3    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.2    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.2    
45.4    
45.5    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.7    
46.8    
46.9    
47.0    
47.1    
47.3    
47.4    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.2    
48.3    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.6    
49.8    
49.9    
50.0    
50.1    
50.2    
50.4    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.7    
51.8    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.6    
52.7    
52.9    
53.0    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.6    
54.8    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.0    
67.1    
67.3    
67.4    
67.5    
67.6    
67.7    
67.9    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.6    
69.8    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.7    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.3    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.3    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.1    
85.2    
85.4    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.3    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.7    
92.9    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 15160, rend_intergenic: 8207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34855, rend_intergenic: 32982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72346, rend_intergenic: 66913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177043, rend_intergenic: 169055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 258185, rend_intergenic: 250890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support