-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_4244851-4462496

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.997-T1
Valid prediction for snap_scaffold_7-snap.1012-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.29819_t
Valid prediction for snap_scaffold_7-snap.995-T1
Valid prediction for GlimmerHMM_glimmerT_17703-T1
Valid prediction for Augustus_model.g11868.t1
Valid prediction for GlimmerHMM_glimmerT_17690-T1
Valid prediction for snap_scaffold_7-snap.1003-T1
Valid prediction for GeneMark_model.29821_t
Valid prediction for Augustus_model.g11854.t1
Valid prediction for snap_scaffold_7-snap.993-T1
Valid prediction for GeneMark_model.29809_t
Valid prediction for Augustus_model.g11861.t1
Valid prediction for GlimmerHMM_glimmerT_17701-T1
Valid prediction for GlimmerHMM_glimmerT_17705-T1
Valid prediction for snap_scaffold_7-snap.994-T1
Valid prediction for Augustus_model.g11872.t1
Valid prediction for GeneMark_model.29822_t
Valid prediction for GlimmerHMM_glimmerT_17693-T1
Valid prediction for snap_scaffold_7-snap.990-T1
Valid prediction for GlimmerHMM_glimmerT_17707-T1
Valid prediction for GeneMark_model.29813_t
Valid prediction for GlimmerHMM_glimmerT_17708-T1
Valid prediction for GeneMark_model.29800_t
Valid prediction for snap_scaffold_7-snap.1016-T1
Valid prediction for Augustus_model.g11873.t1
Valid prediction for snap_scaffold_7-snap.998-T1
Valid prediction for pasa_asmbl_50612.p1
Valid prediction for snap_scaffold_7-snap.1000-T1
Valid prediction for GeneMark_model.29810_t
Valid prediction for Augustus_model.g11870.t1
Valid prediction for GeneMark_model.29801_t
Valid prediction for GeneMark_model.29804_t
Valid prediction for CodingQuarry_transcript_57335-T1
Valid prediction for snap_scaffold_7-snap.988-T1
Valid prediction for snap_scaffold_7-snap.987-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.1006-T1
Valid prediction for Augustus_model.g11867.t1
Valid prediction for GeneMark_model.29816_t
Valid prediction for snap_scaffold_7-snap.1013-T1
Valid prediction for GeneMark_model.29820_t
Valid prediction for GlimmerHMM_glimmerT_17702-T1
Valid prediction for Augustus_model.g11865.t1
Valid prediction for Augustus_model.g11869.t1
Valid prediction for GeneMark_model.29798_t
Valid prediction for GeneMark_model.29818_t
Valid prediction for snap_scaffold_7-snap.1015-T1
Valid prediction for GeneMark_model.29799_t
Valid prediction for Augustus_model.g11855.t1
Valid prediction for GlimmerHMM_glimmerT_17694-T1
Valid prediction for Augustus_model.g11866.t1
Valid prediction for snap_scaffold_7-snap.1007-T1
Valid prediction for Augustus_model.g11863.t1
Valid prediction for GeneMark_model.29811_t
Valid prediction for snap_scaffold_7-snap.1010-T1
Valid prediction for GeneMark_model.29817_t
Valid prediction for GlimmerHMM_glimmerT_17697-T1
Valid prediction for snap_scaffold_7-snap.996-T1
Valid prediction for snap_scaffold_7-snap.1002-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.29814_t
Valid prediction for Augustus_model.g11857.t1
Valid prediction for GlimmerHMM_glimmerT_17691-T1
Valid prediction for GeneMark_model.29808_t
Valid prediction for GlimmerHMM_glimmerT_17695-T1
Valid prediction for snap_scaffold_7-snap.1009-T1
Valid prediction for snap_scaffold_7-snap.1001-T1
Valid prediction for Augustus_model.g11856.t1
Valid prediction for snap_scaffold_7-snap.1005-T1
Valid prediction for GlimmerHMM_glimmerT_17704-T1
Valid prediction for GlimmerHMM_glimmerT_17699-T1
Valid prediction for GeneMark_model.29805_t
Valid prediction for snap_scaffold_7-snap.1014-T1
Valid prediction for Augustus_model.g11871.t1
Valid prediction for snap_scaffold_7-snap.1008-T1
Valid prediction for Augustus_model.g11858.t1
Valid prediction for GlimmerHMM_glimmerT_17696-T1
Valid prediction for GeneMark_model.29803_t
Valid prediction for Augustus_model.g11862.t1
Valid prediction for GeneMark_model.29806_t
Valid prediction for snap_scaffold_7-snap.989-T1
Valid prediction for snap_scaffold_7-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_17698-T1
Valid prediction for GlimmerHMM_glimmerT_17706-T1
Valid prediction for Augustus_model.g11860.t1
Valid prediction for GlimmerHMM_glimmerT_17692-T1
Valid prediction for snap_scaffold_7-snap.992-T1
Valid prediction for snap_scaffold_7-snap.991-T1
Valid prediction for Augustus_model.g11864.t1
Valid prediction for GeneMark_model.29812_t
Valid prediction for snap_scaffold_7-snap.1004-T1
Valid prediction for GeneMark_model.29802_t
Valid prediction for Augustus_model.g11859.t1
Valid prediction for snap_scaffold_7-snap.999-T1
Valid prediction for GeneMark_model.29815_t
Valid prediction for GlimmerHMM_glimmerT_17700-T1
Valid prediction for GeneMark_model.29807_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 61743, rend_intergenic: 51266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217646
-exon list size: 332


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
41.0    
41.3    
41.6    
41.9    
42.2    
42.5    
42.8    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.2    
57.5    
57.8    
58.1    
58.4    
58.7    
59.0    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 61743, rend_intergenic: 51266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13248
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12787
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support