-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_3168304-3419707

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.29610_t
Valid prediction for GlimmerHMM_glimmerT_17555-T1
Valid prediction for GeneMark_model.29630_t
Valid prediction for GeneMark_model.29572_t
Valid prediction for snap_scaffold_7-snap.800-T1
Valid prediction for CodingQuarry_transcript_57305-T1
Valid prediction for GeneMark_model.29588_t
Valid prediction for snap_scaffold_7-snap.810-T1
Valid prediction for snap_scaffold_7-snap.808-T1
Valid prediction for GlimmerHMM_glimmerT_17556-T1
Valid prediction for GeneMark_model.29614_t
Valid prediction for snap_scaffold_7-snap.799-T1
Valid prediction for snap_scaffold_7-snap.773-T1
Valid prediction for GlimmerHMM_glimmerT_17552-T1
Valid prediction for snap_scaffold_7-snap.806-T1
Valid prediction for GlimmerHMM_glimmerT_17549-T1
Valid prediction for GeneMark_model.29604_t
Valid prediction for GlimmerHMM_glimmerT_17547-T1
Valid prediction for GeneMark_model.29642_t
Valid prediction for Augustus_model.g11744.t1
Valid prediction for GlimmerHMM_glimmerT_17557-T1
Valid prediction for GeneMark_model.29594_t
Valid prediction for GlimmerHMM_glimmerT_17551-T1
Valid prediction for GeneMark_model.29606_t
Valid prediction for snap_scaffold_7-snap.775-T1
Valid prediction for GlimmerHMM_glimmerT_17546-T1
Valid prediction for GeneMark_model.29601_t
Valid prediction for GeneMark_model.29634_t
Valid prediction for snap_scaffold_7-snap.811-T1
Valid prediction for GeneMark_model.29576_t
Valid prediction for HiQ_model.g11750.t1
Valid prediction for Augustus_model.g11748.t1
Valid prediction for GeneMark_model.29637_t
Valid prediction for GlimmerHMM_glimmerT_17554-T1
Valid prediction for pasa_asmbl_50565.p1
Valid prediction for GeneMark_model.29591_t
Valid prediction for GeneMark_model.29628_t
Valid prediction for GeneMark_model.29584_t
Valid prediction for snap_scaffold_7-snap.763-T1
Valid prediction for snap_scaffold_7-snap.798-T1
Valid prediction for GeneMark_model.29638_t
Valid prediction for GeneMark_model.29596_t
Valid prediction for snap_scaffold_7-snap.790-T1
Valid prediction for GeneMark_model.29618_t
Valid prediction for snap_scaffold_7-snap.784-T1
Valid prediction for snap_scaffold_7-snap.758-T1
Valid prediction for GeneMark_model.29586_t
Valid prediction for snap_scaffold_7-snap.777-T1
Valid prediction for GeneMark_model.29626_t
Valid prediction for snap_scaffold_7-snap.778-T1
Valid prediction for GlimmerHMM_glimmerT_17540-T1
Couldn't classify 202133, 202313
Couldn't classify 203633, 203686
Sorry, prediction pasa_asmbl_50561.p1 fails validation.
(TAC)	 AC	202133-202313	GT	GAG
(CTG)	 AG	202900-203058	GT	CAG
(GCC)	 AG	203210-203403	GT	AGG
(GTG)	 AG	203633-203686	AA	AGA
-recovered pasa_asmbl_50561.p1, internal, 202900, 203058
-recovered pasa_asmbl_50561.p1, internal, 203210, 203403
Valid prediction for Augustus_model.g11749.t1
Valid prediction for snap_scaffold_7-snap.785-T1
Valid prediction for snap_scaffold_7-snap.769-T1
Valid prediction for GeneMark_model.29640_t
Valid prediction for GeneMark_model.29598_t
Valid prediction for GeneMark_model.29578_t
Valid prediction for GeneMark_model.29602_t
Valid prediction for GlimmerHMM_glimmerT_17573-T1
Couldn't classify 200937, 201031
Sorry, prediction pasa_asmbl_50560.p1 fails validation.
(ATG)	 AA	199416-199581	GT	AGG
(GCT)	 AG	200078-200129	GT	AGG
(GCA)	 AG	200402-200499	GT	AGG
(AAC)	 AG	200937-201031	AA	TGA
-recovered pasa_asmbl_50560.p1, initial, 199416, 199581
-recovered pasa_asmbl_50560.p1, internal, 200078, 200129
-recovered pasa_asmbl_50560.p1, internal, 200402, 200499
Valid prediction for GlimmerHMM_glimmerT_17567-T1
Valid prediction for Augustus_model.g11742.t1
Valid prediction for GlimmerHMM_glimmerT_17558-T1
Valid prediction for GlimmerHMM_glimmerT_17559-T1
Valid prediction for GeneMark_model.29575_t
Valid prediction for GeneMark_model.29590_t
Valid prediction for GlimmerHMM_glimmerT_17562-T1
Couldn't classify 191898, 192474
Sorry, prediction pasa_asmbl_50559.p1 fails validation.
(CCA)	 TG	191898-192474	GT	TGG
(GTA)	 AG	192582-192635	GT	AGG
(CCA)	 AG	194066-194126	GT	AGG
(GGT)	 AG	194374-194441	GT	AGG
(CCT)	 AG	194544-195270	GT	AGG
(GTA)	 AG	195439-195621	GT	AGG
(CCC)	 AG	196461-196539	GT	TTG
(GAG)	 AG	196648-196769	GT	GGG
(CGA)	 AG	197282-197433	GT	TGG
(ATT)	 AG	197705-197805	CA	AAC
add_exon() Sorry, pasa_asmbl_50559.p1 194066-194126-terminal-3 is invalid.
-recovered pasa_asmbl_50559.p1, terminal, 194066, 194126
-recovered pasa_asmbl_50559.p1, terminal, 197705, 197805
-recovered pasa_asmbl_50559.p1, internal, 192582, 192635
-recovered pasa_asmbl_50559.p1, internal, 194066, 194126
-recovered pasa_asmbl_50559.p1, internal, 194374, 194441
-recovered pasa_asmbl_50559.p1, internal, 194544, 195270
-recovered pasa_asmbl_50559.p1, internal, 195439, 195621
-recovered pasa_asmbl_50559.p1, internal, 196461, 196539
-recovered pasa_asmbl_50559.p1, internal, 196648, 196769
-recovered pasa_asmbl_50559.p1, internal, 197282, 197433
Couldn't classify 189684, 189815
Couldn't classify 190467, 190631
Sorry, prediction pasa_asmbl_51445.p1 fails validation.
(GAG)	 AG	189684-189815	GT	CGG
(CTG)	 AG	190204-190284	GT	AGG
(AGC)	 AG	190467-190631	GA	AAG
-recovered pasa_asmbl_51445.p1, internal, 189684, 189815
-recovered pasa_asmbl_51445.p1, internal, 190204, 190284
Valid prediction for GeneMark_model.29636_t
Valid prediction for GlimmerHMM_glimmerT_17572-T1
Valid prediction for GeneMark_model.29632_t
Valid prediction for GeneMark_model.29625_t
Valid prediction for snap_scaffold_7-snap.787-T1
Couldn't classify 190839, 191342
Sorry, prediction pasa_asmbl_50558.p1 fails validation.
(GGC)	 AC	190839-191342	CC	AGC
Valid prediction for GeneMark_model.29573_t
Valid prediction for snap_scaffold_7-snap.765-T1
Valid prediction for snap_scaffold_7-snap.801-T1
Valid prediction for CodingQuarry_transcript_57307-T1
Valid prediction for GlimmerHMM_glimmerT_17542-T1
Valid prediction for GeneMark_model.29582_t
Valid prediction for snap_scaffold_7-snap.804-T1
Valid prediction for snap_scaffold_7-snap.754-T1
Valid prediction for pasa_asmbl_50567.p1
Valid prediction for Augustus_model.g11741.t1
Valid prediction for snap_scaffold_7-snap.814-T1
Valid prediction for GlimmerHMM_glimmerT_17569-T1
Valid prediction for GeneMark_model.29593_t
Valid prediction for GlimmerHMM_glimmerT_17570-T1
Valid prediction for GeneMark_model.29619_t
Valid prediction for GeneMark_model.29580_t
Valid prediction for snap_scaffold_7-snap.760-T1
Valid prediction for GeneMark_model.29623_t
Valid prediction for snap_scaffold_7-snap.780-T1
Valid prediction for snap_scaffold_7-snap.788-T1
Valid prediction for snap_scaffold_7-snap.768-T1
Couldn't classify 203786, 203887
Sorry, prediction pasa_asmbl_50562.p1 fails validation.
(GAC)	 CA	203786-203887	GT	AGG
(GAG)	 AG	204211-204414	GT	AGG
(GTG)	 AG	205006-205180	GT	AGG
(ATG)	 AG	206927-207042	TA	GAT
add_exon() Sorry, pasa_asmbl_50562.p1 205006-205180-terminal-3 is invalid.
-recovered pasa_asmbl_50562.p1, terminal, 205006, 205180
-recovered pasa_asmbl_50562.p1, terminal, 206927, 207042
-recovered pasa_asmbl_50562.p1, internal, 204211, 204414
-recovered pasa_asmbl_50562.p1, internal, 205006, 205180
Valid prediction for snap_scaffold_7-snap.794-T1
Valid prediction for Augustus_model.g11747.t1
Valid prediction for snap_scaffold_7-snap.755-T1
Valid prediction for snap_scaffold_7-snap.796-T1
Valid prediction for GlimmerHMM_glimmerT_17568-T1
Valid prediction for GeneMark_model.29616_t
Valid prediction for GeneMark_model.29608_t
Valid prediction for snap_scaffold_7-snap.767-T1
Valid prediction for GlimmerHMM_glimmerT_17548-T1
Valid prediction for GeneMark_model.29633_t
Valid prediction for CodingQuarry_transcript_57306-T1
Valid prediction for GeneMark_model.29599_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_17541-T1
Valid prediction for HiQ_model.g11752.t1
Couldn't classify 103146, 103160
Couldn't classify 105122, 105196
Sorry, prediction pasa_asmbl_49597.p1 fails validation.
(CTG)	 CT	103146-103160	GT	AGG
(ACT)	 AG	103347-103439	GT	TGG
(GAG)	 AG	103736-103789	GT	ATG
(GGC)	 AG	104028-104108	GT	AAG
(GAG)	 AG	104620-104688	GT	CAG
(ATC)	 AG	104812-104901	GT	TGG
(AAT)	 AG	105122-105196	AA	CCA
-recovered pasa_asmbl_49597.p1, internal, 103347, 103439
-recovered pasa_asmbl_49597.p1, internal, 103736, 103789
-recovered pasa_asmbl_49597.p1, internal, 104028, 104108
-recovered pasa_asmbl_49597.p1, internal, 104620, 104688
-recovered pasa_asmbl_49597.p1, internal, 104812, 104901
Valid prediction for snap_scaffold_7-snap.812-T1
Valid prediction for snap_scaffold_7-snap.791-T1
Valid prediction for snap_scaffold_7-snap.809-T1
Valid prediction for snap_scaffold_7-snap.766-T1
Valid prediction for GeneMark_model.29624_t
Valid prediction for snap_scaffold_7-snap.802-T1
Valid prediction for Augustus_model.g11753.t1
Valid prediction for snap_scaffold_7-snap.797-T1
Valid prediction for GlimmerHMM_glimmerT_17574-T1
Valid prediction for snap_scaffold_7-snap.813-T1
Valid prediction for GeneMark_model.29595_t
Valid prediction for GlimmerHMM_glimmerT_17550-T1
Valid prediction for GeneMark_model.29577_t
Valid prediction for GeneMark_model.29629_t
Valid prediction for GlimmerHMM_glimmerT_17561-T1
Valid prediction for Augustus_model.g11740.t1
Valid prediction for GeneMark_model.29592_t
Valid prediction for GeneMark_model.29617_t
Valid prediction for GeneMark_model.29641_t
Valid prediction for pasa_asmbl_49600.p1
Valid prediction for snap_scaffold_7-snap.795-T1
Valid prediction for GeneMark_model.29581_t
Valid prediction for snap_scaffold_7-snap.764-T1
Valid prediction for snap_scaffold_7-snap.771-T1
Valid prediction for pasa_asmbl_49609.p1
Couldn't classify 2278, 2389
Sorry, prediction pasa_asmbl_49608.p1 fails validation.
(GGG)	 GT	2278-2389	GT	GGG
(AAA)	 AG	3491-3633	GT	AGG
(ATT)	 AG	4005-4090	GT	GTG
(AGC)	 AG	5722-5794	GT	AAG
(CAG)	 AG	6164-6320	GT	GGG
(ACA)	 AG	6446-6548	GT	CAG
(GAG)	 AG	7276-7410	GT	AGG
(GGG)	 AG	9157-9295	GT	AGG
(ATC)	 AG	9747-9815	GT	AGG
(ACT)	 AG	10039-10128	GA	GAG
-recovered pasa_asmbl_49608.p1, terminal, 10039, 10128
-recovered pasa_asmbl_49608.p1, internal, 3491, 3633
-recovered pasa_asmbl_49608.p1, internal, 4005, 4090
-recovered pasa_asmbl_49608.p1, internal, 5722, 5794
-recovered pasa_asmbl_49608.p1, internal, 6164, 6320
-recovered pasa_asmbl_49608.p1, internal, 6446, 6548
-recovered pasa_asmbl_49608.p1, internal, 7276, 7410
-recovered pasa_asmbl_49608.p1, internal, 9157, 9295
-recovered pasa_asmbl_49608.p1, internal, 9747, 9815
Valid prediction for GeneMark_model.29605_t
Valid prediction for GlimmerHMM_glimmerT_17564-T1
Valid prediction for snap_scaffold_7-snap.783-T1
Valid prediction for snap_scaffold_7-snap.782-T1
Valid prediction for GeneMark_model.29574_t
Valid prediction for Augustus_model.g11754.t1
Valid prediction for GeneMark_model.29639_t
Valid prediction for GeneMark_model.29620_t
Valid prediction for GlimmerHMM_glimmerT_17577-T1
Valid prediction for snap_scaffold_7-snap.757-T1
Valid prediction for snap_scaffold_7-snap.789-T1
Valid prediction for snap_scaffold_7-snap.793-T1
Valid prediction for GlimmerHMM_glimmerT_17566-T1
Valid prediction for GeneMark_model.29583_t
Valid prediction for GlimmerHMM_glimmerT_17560-T1
Valid prediction for GlimmerHMM_glimmerT_17571-T1
Valid prediction for snap_scaffold_7-snap.770-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.29579_t
Valid prediction for GeneMark_model.29627_t
Valid prediction for GeneMark_model.29612_t
Valid prediction for snap_scaffold_7-snap.779-T1
Valid prediction for GeneMark_model.29587_t
Valid prediction for GlimmerHMM_glimmerT_17545-T1
Valid prediction for HiQ_model.g11751.t1
Valid prediction for GeneMark_model.29607_t
Valid prediction for CodingQuarry_transcript_57309-T1
Valid prediction for snap_scaffold_7-snap.807-T1
Valid prediction for snap_scaffold_7-snap.772-T1
Valid prediction for snap_scaffold_7-snap.781-T1
Valid prediction for GlimmerHMM_glimmerT_17576-T1
Couldn't classify 100278, 100302
Couldn't classify 100680, 100818
Sorry, prediction pasa_asmbl_49598.p1 fails validation.
(AAC)	 CC	100278-100302	GT	AAG
(GTG)	 AG	100377-100533	GT	AGG
(GTG)	 AG	100680-100818	TC	GCT
-recovered pasa_asmbl_49598.p1, internal, 100377, 100533
Valid prediction for CodingQuarry_transcript_57302-T1
Valid prediction for snap_scaffold_7-snap.792-T1
Valid prediction for GeneMark_model.29615_t
Valid prediction for GeneMark_model.29613_t
Valid prediction for snap_scaffold_7-snap.815-T1
Valid prediction for GlimmerHMM_glimmerT_17544-T1
Valid prediction for GeneMark_model.29597_t
Valid prediction for CodingQuarry_transcript_57308-T1
Valid prediction for snap_scaffold_7-snap.759-T1
Valid prediction for GeneMark_model.29643_t
Valid prediction for snap_scaffold_7-snap.776-T1
Valid prediction for Augustus_model.g11745.t1
Valid prediction for snap_scaffold_7-snap.774-T1
Valid prediction for GeneMark_model.29622_t
Valid prediction for Augustus_model.g11746.t1
Valid prediction for snap_scaffold_7-snap.803-T1
Valid prediction for GlimmerHMM_glimmerT_17553-T1
Valid prediction for GlimmerHMM_glimmerT_17575-T1
Valid prediction for GeneMark_model.29631_t
Valid prediction for GeneMark_model.29609_t
Valid prediction for snap_scaffold_7-snap.786-T1
Valid prediction for snap_scaffold_7-snap.762-T1
Valid prediction for GeneMark_model.29635_t
Valid prediction for GeneMark_model.29585_t
Valid prediction for GeneMark_model.29644_t
Valid prediction for snap_scaffold_7-snap.805-T1
Valid prediction for snap_scaffold_7-snap.756-T1
Valid prediction for GeneMark_model.29589_t
Valid prediction for pasa_asmbl_49604.p1
Valid prediction for pasa_asmbl_49606.p1
Valid prediction for GlimmerHMM_glimmerT_17563-T1
Couldn't classify 21992, 22087
Sorry, prediction pasa_asmbl_49605.p1 fails validation.
(CAC)	 AG	21992-22087	GT	AGG
(GAT)	 AG	22335-22568	GT	AGG
(AAC)	 AG	22697-22728	GT	AGG
(ATC)	 AG	22957-23072	GT	AGG
(TAC)	 AG	23469-24151	CA	AAC
-recovered pasa_asmbl_49605.p1, terminal, 23469, 24151
-recovered pasa_asmbl_49605.p1, internal, 21992, 22087
-recovered pasa_asmbl_49605.p1, internal, 22335, 22568
-recovered pasa_asmbl_49605.p1, internal, 22697, 22728
-recovered pasa_asmbl_49605.p1, internal, 22957, 23072
Couldn't classify 84416, 84417
Sorry, prediction CodingQuarry_transcript_57303-T1 fails validation.
(ATG)	 AG	81872-81908	GT	GGG
(CTG)	 AG	82249-82372	GT	AGG
(CCG)	 AG	82606-82748	GT	CTG
(GAC)	 AG	84416-84417	CG	GAC
-recovered CodingQuarry_transcript_57303-T1, initial, 81872, 81908
-recovered CodingQuarry_transcript_57303-T1, internal, 81872, 81908
-recovered CodingQuarry_transcript_57303-T1, internal, 82249, 82372
-recovered CodingQuarry_transcript_57303-T1, internal, 82606, 82748
Valid prediction for GeneMark_model.29600_t
Valid prediction for Augustus_model.g11743.t1
Valid prediction for snap_scaffold_7-snap.761-T1
Valid prediction for GlimmerHMM_glimmerT_17543-T1
Valid prediction for GeneMark_model.29603_t
Valid prediction for GlimmerHMM_glimmerT_17565-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8763, rend_intergenic: 7106  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14521, rend_intergenic: 10661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18675, rend_intergenic: 15990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30084, rend_intergenic: 19856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35019, rend_intergenic: 30354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40040, rend_intergenic: 38978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42181, rend_intergenic: 40771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43920, rend_intergenic: 42183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49068, rend_intergenic: 45798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66816, rend_intergenic: 49110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76272, rend_intergenic: 66899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80005, rend_intergenic: 78637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84059, rend_intergenic: 80668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90308, rend_intergenic: 84111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98124, rend_intergenic: 90960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110738, rend_intergenic: 104814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130571, rend_intergenic: 119134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134213, rend_intergenic: 130814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151944, rend_intergenic: 148331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157007, rend_intergenic: 153000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173222, rend_intergenic: 164862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182318, rend_intergenic: 178836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186082, rend_intergenic: 182390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211491, rend_intergenic: 204162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236461, rend_intergenic: 227363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245808, rend_intergenic: 243775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 251404
-exon list size: 979


building trellis

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11.9    
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12.8    
12.9    
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13.1    
13.3    
13.4    
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13.7    
13.8    
13.9    
14.0    
14.1    
14.2    
14.3    
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14.5    
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14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.0    
16.1    
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16.7    
16.8    
16.9    
17.0    
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17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 52 predictions from path traversal
Error with prediction: snap lend_intergenic: 8763, rend_intergenic: 7106  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14521, rend_intergenic: 10661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18675, rend_intergenic: 15990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30084, rend_intergenic: 19856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35019, rend_intergenic: 30354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40040, rend_intergenic: 38978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42181, rend_intergenic: 40771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43920, rend_intergenic: 42183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49068, rend_intergenic: 45798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66816, rend_intergenic: 49110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76272, rend_intergenic: 66899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80005, rend_intergenic: 78637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84059, rend_intergenic: 80668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90308, rend_intergenic: 84111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98124, rend_intergenic: 90960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110738, rend_intergenic: 104814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130571, rend_intergenic: 119134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134213, rend_intergenic: 130814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151944, rend_intergenic: 148331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157007, rend_intergenic: 153000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173222, rend_intergenic: 164862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182318, rend_intergenic: 178836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186082, rend_intergenic: 182390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211491, rend_intergenic: 204162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236461, rend_intergenic: 227363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245808, rend_intergenic: 243775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support