-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_18667052-19022841

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_57632-T1
Valid prediction for snap_scaffold_7-snap.3677-T1
Valid prediction for GeneMark_model.32983_t
Valid prediction for GlimmerHMM_glimmerT_19479-T1
Couldn't classify 136540, 136929
Sorry, prediction pasa_asmbl_51428.p1 fails validation.
(GGG)	 CA	136540-136929	CT	TGC
Valid prediction for snap_scaffold_7-snap.3661-T1
Valid prediction for GeneMark_model.32928_t
Valid prediction for snap_scaffold_7-snap.3658-T1
Valid prediction for GeneMark_model.32932_t
Valid prediction for snap_scaffold_7-snap.3694-T1
Valid prediction for GeneMark_model.33008_t
Valid prediction for GeneMark_model.33027_t
Valid prediction for snap_scaffold_7-snap.3660-T1
Valid prediction for Augustus_model.g13103.t1
Valid prediction for GeneMark_model.32944_t
Valid prediction for GlimmerHMM_glimmerT_19465-T1
Valid prediction for Augustus_model.g13105.t1
Valid prediction for snap_scaffold_7-snap.3653-T1
Valid prediction for GlimmerHMM_glimmerT_19482-T1
Valid prediction for GeneMark_model.33025_t
Valid prediction for snap_scaffold_7-snap.3670-T1
Valid prediction for Augustus_model.g13099.t1
Valid prediction for snap_scaffold_7-snap.3663-T1
Valid prediction for snap_scaffold_7-snap.3666-T1
Valid prediction for snap_scaffold_7-snap.3657-T1
Valid prediction for GeneMark_model.32989_t
Couldn't classify 130929, 131107
Sorry, prediction pasa_asmbl_51427.p2 fails validation.
(ATG)	 CC	127286-127382	GT	TGG
(GGA)	 AG	130120-130183	GT	AGG
(AAG)	 AG	130286-130348	GT	AGG
(GTG)	 AG	130483-130586	GT	AGG
(GAG)	 AG	130929-131107	AA	CCA
-recovered pasa_asmbl_51427.p2, initial, 127286, 127382
-recovered pasa_asmbl_51427.p2, internal, 130120, 130183
-recovered pasa_asmbl_51427.p2, internal, 130286, 130348
-recovered pasa_asmbl_51427.p2, internal, 130483, 130586
Valid prediction for GeneMark_model.32974_t
Valid prediction for GeneMark_model.33012_t
Valid prediction for snap_scaffold_7-snap.3685-T1
Couldn't classify 116410, 116473
Sorry, prediction pasa_asmbl_51422.p1 fails validation.
(TCT)	 GC	116410-116473	GT	AGG
(TCC)	 AG	117199-117350	GT	AGG
(GTG)	 AG	117450-117599	GT	TGG
(TCT)	 AG	117678-117782	GT	AGG
(ATT)	 AG	117877-118035	GT	ATG
(GTC)	 AG	118455-118545	GT	AGG
(GCC)	 AG	118624-118748	GT	AGG
(GTA)	 AG	118906-119050	GT	AGG
(GTC)	 AG	119584-119657	GT	AGG
(AGG)	 AG	119773-119872	GT	AGG
(GCC)	 AG	120063-120283	GT	AGG
(GTG)	 AG	120604-120741	GT	TGG
(GTA)	 AG	120875-121070	GT	CAG
(TTA)	 AG	121217-121338	GT	AGG
(GTC)	 AG	121886-122072	GT	CGG
(AGG)	 AG	122228-122323	GT	GGG
(GGG)	 AG	123290-123471	GA	AGG
-recovered pasa_asmbl_51422.p1, terminal, 123290, 123471
-recovered pasa_asmbl_51422.p1, internal, 117199, 117350
-recovered pasa_asmbl_51422.p1, internal, 117450, 117599
-recovered pasa_asmbl_51422.p1, internal, 117678, 117782
-recovered pasa_asmbl_51422.p1, internal, 117877, 118035
-recovered pasa_asmbl_51422.p1, internal, 118455, 118545
-recovered pasa_asmbl_51422.p1, internal, 118624, 118748
-recovered pasa_asmbl_51422.p1, internal, 118906, 119050
-recovered pasa_asmbl_51422.p1, internal, 119584, 119657
-recovered pasa_asmbl_51422.p1, internal, 119773, 119872
-recovered pasa_asmbl_51422.p1, internal, 120063, 120283
-recovered pasa_asmbl_51422.p1, internal, 120604, 120741
-recovered pasa_asmbl_51422.p1, internal, 120875, 121070
-recovered pasa_asmbl_51422.p1, internal, 121217, 121338
-recovered pasa_asmbl_51422.p1, internal, 121886, 122072
-recovered pasa_asmbl_51422.p1, internal, 122228, 122323
Valid prediction for GlimmerHMM_glimmerT_19458-T1
Valid prediction for GeneMark_model.32951_t
Valid prediction for snap_scaffold_7-snap.3651-T1
Valid prediction for snap_scaffold_7-snap.3705-T1
Valid prediction for GeneMark_model.32953_t
Valid prediction for snap_scaffold_7-snap.3697-T1
Valid prediction for snap_scaffold_7-snap.3713-T1
Valid prediction for GeneMark_model.32946_t
Valid prediction for snap_scaffold_7-snap.3668-T1
Valid prediction for GlimmerHMM_glimmerT_19472-T1
Valid prediction for GlimmerHMM_glimmerT_19459-T1
Valid prediction for snap_scaffold_7-snap.3708-T1
Valid prediction for GeneMark_model.33003_t
Valid prediction for GeneMark_model.32980_t
Valid prediction for snap_scaffold_7-snap.3702-T1
Valid prediction for GeneMark_model.33028_t
Valid prediction for GeneMark_model.33031_t
Valid prediction for GlimmerHMM_glimmerT_19462-T1
Valid prediction for GeneMark_model.32963_t
Valid prediction for Augustus_model.g13098.t1
Valid prediction for GlimmerHMM_glimmerT_19451-T1
Valid prediction for GeneMark_model.32936_t
Valid prediction for GeneMark_model.33024_t
Valid prediction for GeneMark_model.33017_t
Valid prediction for snap_scaffold_7-snap.3665-T1
Valid prediction for GlimmerHMM_glimmerT_19466-T1
Valid prediction for GlimmerHMM_glimmerT_19471-T1
Valid prediction for GeneMark_model.32934_t
Valid prediction for GlimmerHMM_glimmerT_19483-T1
Valid prediction for snap_scaffold_7-snap.3671-T1
Valid prediction for snap_scaffold_7-snap.3689-T1
Valid prediction for GeneMark_model.33021_t
Valid prediction for GlimmerHMM_glimmerT_19490-T1
Valid prediction for GeneMark_model.32999_t
Valid prediction for snap_scaffold_7-snap.3721-T1
Valid prediction for snap_scaffold_7-snap.3695-T1
Valid prediction for Augustus_model.g13106.t1
Valid prediction for GlimmerHMM_glimmerT_19475-T1
Valid prediction for GeneMark_model.32968_t
Valid prediction for snap_scaffold_7-snap.3688-T1
Valid prediction for snap_scaffold_7-snap.3716-T1
Valid prediction for snap_scaffold_7-snap.3710-T1
Valid prediction for snap_scaffold_7-snap.3712-T1
Valid prediction for snap_scaffold_7-snap.3684-T1
Valid prediction for GeneMark_model.32956_t
Valid prediction for HiQ_model.g13096.t1
Valid prediction for GlimmerHMM_glimmerT_19456-T1
Valid prediction for snap_scaffold_7-snap.3719-T1
Valid prediction for GeneMark_model.32997_t
Valid prediction for GeneMark_model.33000_t
Valid prediction for GlimmerHMM_glimmerT_19464-T1
Couldn't classify 163652, 163772
Sorry, prediction pasa_asmbl_51438.p1 fails validation.
(GGT)	 AG	163652-163772	GT	AGG
(GTG)	 AG	164687-164865	CA	AGC
-recovered pasa_asmbl_51438.p1, terminal, 164687, 164865
-recovered pasa_asmbl_51438.p1, internal, 163652, 163772
Valid prediction for GeneMark_model.33032_t
Valid prediction for GlimmerHMM_glimmerT_19467-T1
Valid prediction for Augustus_model.g13102.t1
Valid prediction for GeneMark_model.32958_t
Valid prediction for CodingQuarry_transcript_57622-T1
Valid prediction for GeneMark_model.33023_t
Valid prediction for GeneMark_model.32976_t
Valid prediction for CodingQuarry_transcript_57633-T1
Valid prediction for GeneMark_model.32964_t
Valid prediction for GeneMark_model.33019_t
Valid prediction for snap_scaffold_7-snap.3674-T1
Valid prediction for GeneMark_model.33010_t
Valid prediction for Augustus_model.g13100.t1
Valid prediction for GeneMark_model.32937_t
Valid prediction for snap_scaffold_7-snap.3718-T1
Valid prediction for GeneMark_model.32971_t
Valid prediction for GeneMark_model.32960_t
Valid prediction for GeneMark_model.32942_t
Valid prediction for GeneMark_model.32995_t
Valid prediction for GeneMark_model.32991_t
Valid prediction for snap_scaffold_7-snap.3681-T1
Valid prediction for snap_scaffold_7-snap.3691-T1
Valid prediction for GlimmerHMM_glimmerT_19488-T1
Valid prediction for snap_scaffold_7-snap.3706-T1
Valid prediction for GlimmerHMM_glimmerT_19485-T1
Valid prediction for snap_scaffold_7-snap.3717-T1
Valid prediction for snap_scaffold_7-snap.3704-T1
Valid prediction for snap_scaffold_7-snap.3673-T1
Valid prediction for GlimmerHMM_glimmerT_19450-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.32947_t
Valid prediction for HiQ_model.g13088.t1
Valid prediction for GlimmerHMM_glimmerT_19454-T1
Valid prediction for GeneMark_model.32940_t
Valid prediction for GeneMark_model.32966_t
Valid prediction for snap_scaffold_7-snap.3669-T1
Valid prediction for GlimmerHMM_glimmerT_19474-T1
Valid prediction for GeneMark_model.33004_t
Valid prediction for GeneMark_model.33014_t
Valid prediction for snap_scaffold_7-snap.3701-T1
Valid prediction for GeneMark_model.32979_t
Couldn't classify 13088, 13102
Sorry, prediction GeneMark_model.32930_t fails validation.
(ATG)	 CC	12820-12842	GT	GAG
(TCA)	 AG	12890-12922	GT	CAG
(ACT)	 AG	12952-12999	GC	GGG
(TCA)	 AG	13022-13036	GT	GGG
(TCA)	 AG	13088-13102	GT	GGG
-recovered GeneMark_model.32930_t, initial, 12820, 12842
-recovered GeneMark_model.32930_t, internal, 12890, 12922
-recovered GeneMark_model.32930_t, internal, 12952, 12999
-recovered GeneMark_model.32930_t, internal, 13022, 13036
-recovered GeneMark_model.32930_t, internal, 13088, 13102
Valid prediction for snap_scaffold_7-snap.3675-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_19489-T1
Valid prediction for GeneMark_model.33002_t
Valid prediction for GeneMark_model.33034_t
Valid prediction for GeneMark_model.32993_t
Valid prediction for snap_scaffold_7-snap.3715-T1
Valid prediction for GeneMark_model.32949_t
Valid prediction for snap_scaffold_7-snap.3700-T1
Valid prediction for snap_scaffold_7-snap.3656-T1
Valid prediction for snap_scaffold_7-snap.3655-T1
Valid prediction for GlimmerHMM_glimmerT_19480-T1
Valid prediction for GeneMark_model.33016_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.3696-T1
Couldn't classify 37562, 37647
Sorry, prediction pasa_asmbl_50331.p1 fails validation.
(ATG)	 TT	33773-33858	GT	TGG
(GGG)	 AG	35747-35858	GT	AGG
(GTA)	 AG	37287-37440	GT	GGG
(ACC)	 AG	37562-37647	GA	GAG
-recovered pasa_asmbl_50331.p1, initial, 33773, 33858
-recovered pasa_asmbl_50331.p1, internal, 35747, 35858
-recovered pasa_asmbl_50331.p1, internal, 37287, 37440
Couldn't classify 57057, 57156
Couldn't classify 60300, 60441
Sorry, prediction pasa_asmbl_50329.p2 fails validation.
(GAG)	 TT	57057-57156	GT	AGG
(GCA)	 AG	57845-57920	GT	AAG
(GCA)	 AG	59022-59130	GT	TGG
(GAG)	 AG	60059-60177	GT	AGG
(CCT)	 AG	60300-60441	CC	CCC
-recovered pasa_asmbl_50329.p2, internal, 57845, 57920
-recovered pasa_asmbl_50329.p2, internal, 59022, 59130
-recovered pasa_asmbl_50329.p2, internal, 60059, 60177
Valid prediction for GeneMark_model.32973_t
Valid prediction for snap_scaffold_7-snap.3722-T1
Valid prediction for GeneMark_model.33007_t
Valid prediction for snap_scaffold_7-snap.3720-T1
Valid prediction for GlimmerHMM_glimmerT_19484-T1
Valid prediction for HiQ_model.g13095.t1
Valid prediction for snap_scaffold_7-snap.3667-T1
Valid prediction for GeneMark_model.33018_t
Valid prediction for GeneMark_model.32992_t
Valid prediction for GeneMark_model.32981_t
Couldn't classify 346378, 346686
Sorry, prediction pasa_asmbl_51418.p1 fails validation.
(ACA)	 TC	346378-346686	AC	ACA
Valid prediction for snap_scaffold_7-snap.3680-T1
Valid prediction for GeneMark_model.32965_t
Valid prediction for GeneMark_model.33013_t
Valid prediction for Augustus_model.g13101.t1
Valid prediction for GlimmerHMM_glimmerT_19460-T1
Valid prediction for snap_scaffold_7-snap.3652-T1
Valid prediction for GeneMark_model.33009_t
Valid prediction for Augustus_model.g13097.t1
Valid prediction for snap_scaffold_7-snap.3678-T1
Valid prediction for GlimmerHMM_glimmerT_19468-T1
Valid prediction for GeneMark_model.33033_t
Valid prediction for GeneMark_model.32998_t
Valid prediction for GeneMark_model.32939_t
Valid prediction for GeneMark_model.32929_t
Valid prediction for snap_scaffold_7-snap.3682-T1
Valid prediction for GeneMark_model.32935_t
Valid prediction for GeneMark_model.33026_t
Valid prediction for CodingQuarry_transcript_57626-T1
Valid prediction for snap_scaffold_7-snap.3687-T1
Couldn't classify 255142, 255278
Couldn't classify 255339, 255423
Sorry, prediction CodingQuarry_transcript_57629-T1 fails validation.
(ATG)	 AC	255142-255278	CT	GAC
(CTG)	 GC	255339-255423	CT	AGC
Valid prediction for GeneMark_model.32945_t
Valid prediction for GeneMark_model.33020_t
Valid prediction for snap_scaffold_7-snap.3707-T1
Valid prediction for GlimmerHMM_glimmerT_19481-T1
Valid prediction for GlimmerHMM_glimmerT_19452-T1
Valid prediction for GeneMark_model.32962_t
Valid prediction for snap_scaffold_7-snap.3662-T1
Valid prediction for CodingQuarry_transcript_57630-T1
Valid prediction for snap_scaffold_7-snap.3672-T1
Valid prediction for GeneMark_model.32987_t
Valid prediction for GeneMark_model.32978_t
Valid prediction for GlimmerHMM_glimmerT_19453-T1
Valid prediction for GeneMark_model.33011_t
Valid prediction for GeneMark_model.32990_t
Valid prediction for GlimmerHMM_glimmerT_19457-T1
Valid prediction for Augustus_model.g13091.t1
Valid prediction for GeneMark_model.32985_t
Couldn't classify 65398, 65504
Sorry, prediction pasa_asmbl_50327.p1 fails validation.
(ATG)	 GC	63763-63863	GT	AGG
(GGG)	 AG	64375-64489	GT	AGG
(GTG)	 AG	64607-64778	GT	CGG
(ACC)	 AG	65398-65504	GT	AAG
-recovered pasa_asmbl_50327.p1, initial, 63763, 63863
-recovered pasa_asmbl_50327.p1, internal, 64375, 64489
-recovered pasa_asmbl_50327.p1, internal, 64607, 64778
-recovered pasa_asmbl_50327.p1, internal, 65398, 65504
Valid prediction for snap_scaffold_7-snap.3714-T1
Valid prediction for GeneMark_model.32975_t
Valid prediction for GeneMark_model.33029_t
Valid prediction for GlimmerHMM_glimmerT_19492-T1
Valid prediction for Augustus_model.g13093.t1
Valid prediction for snap_scaffold_7-snap.3709-T1
Valid prediction for GeneMark_model.32952_t
Valid prediction for CodingQuarry_transcript_57624-T1
Valid prediction for GlimmerHMM_glimmerT_19473-T1
Valid prediction for CodingQuarry_transcript_57631-T1
Valid prediction for GeneMark_model.32948_t
Valid prediction for GlimmerHMM_glimmerT_19463-T1
Valid prediction for GeneMark_model.32933_t
Couldn't classify 339056, 339246
Sorry, prediction pasa_asmbl_50310.p1 fails validation.
(ATG)	 GC	336063-336210	GT	AGG
(CGG)	 AG	337134-337289	GT	CGG
(GGG)	 AG	337779-337862	GT	TGG
(TGA)	 AG	339056-339246	GG	CAG
-recovered pasa_asmbl_50310.p1, initial, 336063, 336210
-recovered pasa_asmbl_50310.p1, internal, 337134, 337289
-recovered pasa_asmbl_50310.p1, internal, 337779, 337862
Valid prediction for GeneMark_model.32931_t
Valid prediction for GeneMark_model.33022_t
Valid prediction for GeneMark_model.33035_t
Valid prediction for GeneMark_model.32957_t
Valid prediction for GlimmerHMM_glimmerT_19455-T1
Valid prediction for GeneMark_model.32984_t
Valid prediction for GeneMark_model.32959_t
Valid prediction for snap_scaffold_7-snap.3664-T1
Valid prediction for snap_scaffold_7-snap.3711-T1
Valid prediction for snap_scaffold_7-snap.3692-T1
Valid prediction for snap_scaffold_7-snap.3659-T1
Valid prediction for GeneMark_model.32954_t
Valid prediction for snap_scaffold_7-snap.3686-T1
Valid prediction for GeneMark_model.32950_t
Valid prediction for snap_scaffold_7-snap.3703-T1
Valid prediction for GlimmerHMM_glimmerT_19477-T1
Valid prediction for GeneMark_model.32969_t
Valid prediction for snap_scaffold_7-snap.3699-T1
Couldn't classify 14119, 14289
Sorry, prediction Augustus_model.g13110.t1 fails validation.
(TTG)	 AG	14119-14289	GT	AGG
(ATG)	 AG	16337-16542	CT	GAC
-recovered Augustus_model.g13110.t1, terminal, 16337, 16542
-recovered Augustus_model.g13110.t1, internal, 14119, 14289
Valid prediction for snap_scaffold_7-snap.3698-T1
Valid prediction for GeneMark_model.33006_t
Valid prediction for snap_scaffold_7-snap.3690-T1
Valid prediction for snap_scaffold_7-snap.3679-T1
Valid prediction for GeneMark_model.32955_t
Valid prediction for snap_scaffold_7-snap.3683-T1
Valid prediction for GeneMark_model.32988_t
Valid prediction for GeneMark_model.33001_t
Valid prediction for pasa_asmbl_50322.p1
Valid prediction for GeneMark_model.32994_t
Valid prediction for snap_scaffold_7-snap.3693-T1
Valid prediction for GeneMark_model.32941_t
Valid prediction for GlimmerHMM_glimmerT_19469-T1
Valid prediction for CodingQuarry_transcript_57625-T1
Couldn't classify 323212, 323286
Couldn't classify 324060, 324204
Sorry, prediction pasa_asmbl_50315.p1 fails validation.
(CTG)	 AC	323212-323286	GT	AAG
(GTG)	 AG	323767-323918	GT	AGG
(TGA)	 AG	324060-324204	TA	CGT
-recovered pasa_asmbl_50315.p1, internal, 323767, 323918
Valid prediction for GeneMark_model.32938_t
Valid prediction for GeneMark_model.33005_t
Valid prediction for GlimmerHMM_glimmerT_19461-T1
Valid prediction for GlimmerHMM_glimmerT_19487-T1
Valid prediction for GlimmerHMM_glimmerT_19470-T1
Valid prediction for GeneMark_model.32977_t
Valid prediction for GeneMark_model.32943_t
Valid prediction for GlimmerHMM_glimmerT_19491-T1
Valid prediction for Augustus_model.g13089.t1
Valid prediction for Augustus_model.g13108.t1
Valid prediction for Augustus_model.g13090.t1
Couldn't classify 40885, 41025
Couldn't classify 45087, 45235
Sorry, prediction pasa_asmbl_50330.p1 fails validation.
(TGC)	 AC	40885-41025	GT	AGG
(GTG)	 AG	41420-41522	GC	AGG
(ACC)	 AG	41685-41883	GT	AGG
(CTC)	 AG	42021-42121	GT	CGG
(GTC)	 AG	45087-45235	CA	GCC
-recovered pasa_asmbl_50330.p1, internal, 41420, 41522
-recovered pasa_asmbl_50330.p1, internal, 41685, 41883
-recovered pasa_asmbl_50330.p1, internal, 42021, 42121
Valid prediction for GlimmerHMM_glimmerT_19478-T1
Valid prediction for Augustus_model.g13094.t1
Valid prediction for Augustus_model.g13104.t1
Valid prediction for GeneMark_model.32961_t
Valid prediction for Augustus_model.g13092.t1
Valid prediction for GeneMark_model.32972_t
Valid prediction for GeneMark_model.32996_t
Valid prediction for snap_scaffold_7-snap.3676-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_57623-T1
Valid prediction for GeneMark_model.32970_t
Valid prediction for CodingQuarry_transcript_57627-T1
Valid prediction for Augustus_model.g13109.t1
Valid prediction for Augustus_model.g13107.t1
Valid prediction for GeneMark_model.32967_t
Valid prediction for pasa_asmbl_50314.p1
Valid prediction for CodingQuarry_transcript_57628-T1
Couldn't classify 74657, 74739
Couldn't classify 75122, 75318
Sorry, prediction CodingQuarry_transcript_57634-T1 fails validation.
(ATG)	 AC	72998-73022	GT	AGG
(AGG)	 AG	73563-73660	GT	AGG
(GTG)	 AG	74274-74419	GT	AGG
(TAT)	 AG	74657-74739	TC	TAT
(AAC)	 TA	75122-75318	CC	AGC
-recovered CodingQuarry_transcript_57634-T1, initial, 72998, 73022
-recovered CodingQuarry_transcript_57634-T1, internal, 73563, 73660
-recovered CodingQuarry_transcript_57634-T1, internal, 74274, 74419
Valid prediction for snap_scaffold_7-snap.3654-T1
Valid prediction for GlimmerHMM_glimmerT_19476-T1
Valid prediction for GlimmerHMM_glimmerT_19486-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10485, rend_intergenic: 2870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17117, rend_intergenic: 14215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28666, rend_intergenic: 17325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31725, rend_intergenic: 30244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50106, rend_intergenic: 32287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57388, rend_intergenic: 50279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61039, rend_intergenic: 58852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66412, rend_intergenic: 61149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76771, rend_intergenic: 66561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86456, rend_intergenic: 77473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98703, rend_intergenic: 94464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105213, rend_intergenic: 99434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111709, rend_intergenic: 105692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123471, rend_intergenic: 118942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139278, rend_intergenic: 128562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157364, rend_intergenic: 139368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171582, rend_intergenic: 157530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172428, rend_intergenic: 171602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179425, rend_intergenic: 175306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182910, rend_intergenic: 179567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191263, rend_intergenic: 186668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200254, rend_intergenic: 191731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202067, rend_intergenic: 200303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204023, rend_intergenic: 202895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229570, rend_intergenic: 204179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 253278, rend_intergenic: 236259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 258630, rend_intergenic: 255756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 264785, rend_intergenic: 258783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 269034, rend_intergenic: 268459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275544, rend_intergenic: 272556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277861, rend_intergenic: 275749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 280395, rend_intergenic: 278355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284278, rend_intergenic: 280473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 301636, rend_intergenic: 285866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 305369, rend_intergenic: 302339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 321411, rend_intergenic: 308637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 340811, rend_intergenic: 337527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 347514, rend_intergenic: 346508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 179570, rend_intergenic: 179567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 355790
-exon list size: 1516


building trellis

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65.0    
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65.2    
65.2    
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67.1    
67.1    
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68.1    
68.1    
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68.9    
69.0    
69.0    
69.1    
69.2    
69.2    
69.3    
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69.4    
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69.9    
70.0    
70.0    
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70.4    
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70.9    
71.0    
71.1    
71.1    
71.2    
71.3    
71.3    
71.4    
71.5    
71.5    
71.6    
71.7    
71.7    
71.8    
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71.9    
72.0    
72.1    
72.1    
72.2    
72.3    
72.3    
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72.5    
72.6    
72.7    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.5    
73.6    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.0    
74.1    
74.2    
74.2    
74.3    
74.4    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.8    
74.9    
75.0    
75.0    
75.1    
75.2    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.6    
75.7    
75.8    
75.8    
75.9    
76.0    
76.0    
76.1    
76.2    
76.2    
76.3    
76.4    
76.4    
76.5    
76.5    
76.6    
76.7    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.3    
77.4    
77.5    
77.5    
77.6    
77.7    
77.7    
77.8    
77.9    
77.9    
78.0    
78.1    
78.1    
78.2    
78.3    
78.3    
78.4    
78.5    
78.5    
78.6    
78.7    
78.7    
78.8    
78.9    
78.9    
79.0    
79.1    
79.1    
79.2    
79.2    
79.3    
79.4    
79.4    
79.5    
79.6    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.0    
80.1    
80.2    
80.2    
80.3    
80.4    
80.4    
80.5    
80.6    
80.6    
80.7    
80.8    
80.8    
80.9    
81.0    
81.0    
81.1    
81.2    
81.2    
81.3    
81.4    
81.4    
81.5    
81.6    
81.6    
81.7    
81.8    
81.8    
81.9    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.3    
82.4    
82.5    
82.5    
82.6    
82.7    
82.7    
82.8    
82.9    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.5    
83.6    
83.7    
83.7    
83.8    
83.9    
83.9    
84.0    
84.1    
84.1    
84.2    
84.3    
84.3    
84.4    
84.5    
84.5    
84.6    
84.7    
84.7    
84.8    
84.8    
84.9    
85.0    
85.0    
85.1    
85.2    
85.2    
85.3    
85.4    
85.4    
85.5    
85.6    
85.6    
85.7    
85.8    
85.8    
85.9    
86.0    
86.0    
86.1    
86.2    
86.2    
86.3    
86.4    
86.4    
86.5    
86.6    
86.6    
86.7    
86.8    
86.8    
86.9    
87.0    
87.0    
87.1    
87.2    
87.2    
87.3    
87.4    
87.4    
87.5    
87.5    
87.6    
87.7    
87.7    
87.8    
87.9    
87.9    
88.0    
88.1    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.5    
88.6    
88.7    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.7    
89.8    
89.9    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.3    
90.4    
90.4    
90.5    
90.6    
90.6    
90.7    
90.8    
90.8    
90.9    
91.0    
91.0    
91.1    
91.2    
91.2    
91.3    
91.4    
91.4    
91.5    
91.6    
91.6    
91.7    
91.8    
91.8    
91.9    
92.0    
92.0    
92.1    
92.2    
92.2    
92.3    
92.4    
92.4    
92.5    
92.6    
92.6    
92.7    
92.8    
92.8    
92.9    
93.0    
93.0    
93.1    
93.1    
93.2    
93.3    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.7    
93.8    
93.9    
93.9    
94.0    
94.1    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.5    
94.6    
94.7    
94.7    
94.8    
94.9    
94.9    
95.0    
95.1    
95.1    
95.2    
95.3    
95.3    
95.4    
95.5    
95.5    
95.6    
95.7    
95.7    
95.8    
95.8    
95.9    
96.0    
96.0    
96.1    
96.2    
96.2    
96.3    
96.4    
96.4    
96.5    
96.6    
96.6    
96.7    
96.8    
96.8    
96.9    
97.0    
97.0    
97.1    
97.2    
97.2    
97.3    
97.4    
97.4    
97.5    
97.6    
97.6    
97.7    
97.8    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.2    
98.3    
98.4    
98.4    
98.5    
98.6    
98.6    
98.7    
98.7    
98.8    
98.9    
98.9    
99.0    
99.1    
99.1    
99.2    
99.3    
99.3    
99.4    
99.5    
99.5    
99.6    
99.7    
99.7    
99.8    
99.9    
99.9    
-found 59 predictions from path traversal
Error with prediction: snap lend_intergenic: 10485, rend_intergenic: 2870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17117, rend_intergenic: 14215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28666, rend_intergenic: 17325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31725, rend_intergenic: 30244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50106, rend_intergenic: 32287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57388, rend_intergenic: 50279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61039, rend_intergenic: 58852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66412, rend_intergenic: 61149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76771, rend_intergenic: 66561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86456, rend_intergenic: 77473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98703, rend_intergenic: 94464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105213, rend_intergenic: 99434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111709, rend_intergenic: 105692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123471, rend_intergenic: 118942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139278, rend_intergenic: 128562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157364, rend_intergenic: 139368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171582, rend_intergenic: 157530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172428, rend_intergenic: 171602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179425, rend_intergenic: 175306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182910, rend_intergenic: 179567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191263, rend_intergenic: 186668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200254, rend_intergenic: 191731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202067, rend_intergenic: 200303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204023, rend_intergenic: 202895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229570, rend_intergenic: 204179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 253278, rend_intergenic: 236259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 258630, rend_intergenic: 255756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 264785, rend_intergenic: 258783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 269034, rend_intergenic: 268459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275544, rend_intergenic: 272556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277861, rend_intergenic: 275749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 280395, rend_intergenic: 278355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284278, rend_intergenic: 280473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 301636, rend_intergenic: 285866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 305369, rend_intergenic: 302339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 321411, rend_intergenic: 308637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 340811, rend_intergenic: 337527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 347514, rend_intergenic: 346508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 179570, rend_intergenic: 179567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support