-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_1841846-1988294

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.459-T1
Valid prediction for snap_scaffold_7-snap.449-T1
Valid prediction for GlimmerHMM_glimmerT_17352-T1
Valid prediction for GlimmerHMM_glimmerT_17362-T1
Valid prediction for snap_scaffold_7-snap.455-T1
Valid prediction for GlimmerHMM_glimmerT_17342-T1
Valid prediction for Augustus_model.g11625.t1
Valid prediction for GlimmerHMM_glimmerT_17361-T1
Valid prediction for GeneMark_model.29205_t
Valid prediction for GlimmerHMM_glimmerT_17357-T1
Valid prediction for GeneMark_model.29216_t
Valid prediction for GeneMark_model.29219_t
Valid prediction for GeneMark_model.29207_t
Valid prediction for snap_scaffold_7-snap.440-T1
Valid prediction for GeneMark_model.29193_t
Valid prediction for snap_scaffold_7-snap.466-T1
Valid prediction for GlimmerHMM_glimmerT_17346-T1
Valid prediction for GeneMark_model.29204_t
Valid prediction for snap_scaffold_7-snap.444-T1
Valid prediction for snap_scaffold_7-snap.460-T1
Valid prediction for snap_scaffold_7-snap.452-T1
Valid prediction for Augustus_model.g11622.t1
Valid prediction for GlimmerHMM_glimmerT_17350-T1
Valid prediction for GeneMark_model.29196_t
Valid prediction for GlimmerHMM_glimmerT_17364-T1
Valid prediction for GlimmerHMM_glimmerT_17353-T1
Valid prediction for GeneMark_model.29198_t
Valid prediction for snap_scaffold_7-snap.453-T1
Valid prediction for GeneMark_model.29211_t
Valid prediction for GeneMark_model.29201_t
Valid prediction for snap_scaffold_7-snap.451-T1
Valid prediction for GeneMark_model.29217_t
Valid prediction for GlimmerHMM_glimmerT_17366-T1
Valid prediction for GlimmerHMM_glimmerT_17355-T1
Valid prediction for GeneMark_model.29191_t
Valid prediction for GeneMark_model.29222_t
Valid prediction for snap_scaffold_7-snap.445-T1
Valid prediction for GeneMark_model.29208_t
Valid prediction for GeneMark_model.29223_t
Valid prediction for Augustus_model.g11621.t1
Valid prediction for snap_scaffold_7-snap.454-T1
Valid prediction for snap_scaffold_7-snap.450-T1
Valid prediction for snap_scaffold_7-snap.443-T1
Valid prediction for snap_scaffold_7-snap.465-T1
Valid prediction for GeneMark_model.29199_t
Valid prediction for snap_scaffold_7-snap.439-T1
Valid prediction for snap_scaffold_7-snap.446-T1
Valid prediction for GlimmerHMM_glimmerT_17351-T1
Valid prediction for GlimmerHMM_glimmerT_17347-T1
Valid prediction for snap_scaffold_7-snap.457-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g11623.t1
Valid prediction for GeneMark_model.29210_t
Valid prediction for GeneMark_model.29220_t
Valid prediction for snap_scaffold_7-snap.448-T1
Valid prediction for GlimmerHMM_glimmerT_17360-T1
Valid prediction for GeneMark_model.29202_t
Valid prediction for GeneMark_model.29195_t
Valid prediction for snap_scaffold_7-snap.447-T1
Valid prediction for GeneMark_model.29209_t
Valid prediction for snap_scaffold_7-snap.461-T1
Valid prediction for GlimmerHMM_glimmerT_17345-T1
Valid prediction for GlimmerHMM_glimmerT_17354-T1
Valid prediction for GeneMark_model.29213_t
Valid prediction for GeneMark_model.29221_t
Valid prediction for Augustus_model.g11618.t1
Valid prediction for GlimmerHMM_glimmerT_17359-T1
Valid prediction for GlimmerHMM_glimmerT_17363-T1
Valid prediction for Augustus_model.g11619.t1
Valid prediction for GlimmerHMM_glimmerT_17348-T1
Valid prediction for snap_scaffold_7-snap.438-T1
Valid prediction for GeneMark_model.29212_t
Valid prediction for GeneMark_model.29197_t
Valid prediction for snap_scaffold_7-snap.442-T1
Valid prediction for GlimmerHMM_glimmerT_17343-T1
Valid prediction for GeneMark_model.29189_t
Valid prediction for Augustus_model.g11626.t1
Valid prediction for snap_scaffold_7-snap.458-T1
Valid prediction for snap_scaffold_7-snap.464-T1
Valid prediction for GlimmerHMM_glimmerT_17349-T1
Valid prediction for GeneMark_model.29218_t
Valid prediction for snap_scaffold_7-snap.456-T1
Valid prediction for GeneMark_model.29224_t
Valid prediction for snap_scaffold_7-snap.463-T1
Valid prediction for snap_scaffold_7-snap.437-T1
Valid prediction for GeneMark_model.29192_t
Valid prediction for GeneMark_model.29214_t
Valid prediction for GlimmerHMM_glimmerT_17356-T1
Valid prediction for Augustus_model.g11624.t1
Valid prediction for GeneMark_model.29194_t
Valid prediction for GlimmerHMM_glimmerT_17367-T1
Valid prediction for GlimmerHMM_glimmerT_17358-T1
Valid prediction for snap_scaffold_7-snap.441-T1
Valid prediction for GeneMark_model.29215_t
Valid prediction for GeneMark_model.29206_t
Valid prediction for Augustus_model.g11627.t1
Valid prediction for Augustus_model.g11620.t1
Valid prediction for GeneMark_model.29190_t
Valid prediction for snap_scaffold_7-snap.462-T1
Valid prediction for GlimmerHMM_glimmerT_17365-T1
Valid prediction for GeneMark_model.29200_t
Valid prediction for GeneMark_model.29203_t
Valid prediction for GlimmerHMM_glimmerT_17344-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17649, rend_intergenic: 12617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76082, rend_intergenic: 73300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126123, rend_intergenic: 125312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138173, rend_intergenic: 133906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 146449
-exon list size: 398


building trellis

0.2    
0.5    
0.8    
1.0    
1.2    
1.5    
1.8    
2.0    
2.2    
2.5    
2.8    
3.0    
3.2    
3.5    
3.8    
4.0    
4.2    
4.5    
4.8    
5.0    
5.2    
5.5    
5.8    
6.0    
6.2    
6.5    
6.8    
7.0    
7.2    
7.5    
7.8    
8.0    
8.2    
8.5    
8.8    
9.0    
9.2    
9.5    
9.8    
10.0    
10.2    
10.5    
10.8    
11.0    
11.2    
11.5    
11.8    
12.0    
12.2    
12.5    
12.8    
13.0    
13.2    
13.5    
13.8    
14.0    
14.2    
14.5    
14.8    
15.0    
15.2    
15.5    
15.8    
16.0    
16.2    
16.5    
16.8    
17.0    
17.2    
17.5    
17.8    
18.0    
18.2    
18.5    
18.8    
19.0    
19.2    
19.5    
19.8    
20.0    
20.2    
20.5    
20.8    
21.0    
21.2    
21.5    
21.8    
22.0    
22.2    
22.5    
22.8    
23.0    
23.2    
23.5    
23.8    
24.0    
24.2    
24.5    
24.8    
25.0    
25.2    
25.5    
25.8    
26.0    
26.2    
26.5    
26.8    
27.0    
27.3    
27.5    
27.8    
28.0    
28.2    
28.5    
28.7    
29.0    
29.2    
29.5    
29.8    
30.0    
30.2    
30.5    
30.8    
31.0    
31.2    
31.5    
31.8    
32.0    
32.2    
32.5    
32.8    
33.0    
33.2    
33.5    
33.8    
34.0    
34.2    
34.5    
34.8    
35.0    
35.2    
35.5    
35.8    
36.0    
36.2    
36.5    
36.8    
37.0    
37.2    
37.5    
37.8    
38.0    
38.2    
38.5    
38.8    
39.0    
39.2    
39.5    
39.8    
40.0    
40.2    
40.5    
40.8    
41.0    
41.2    
41.5    
41.8    
42.0    
42.2    
42.5    
42.8    
43.0    
43.2    
43.5    
43.8    
44.0    
44.2    
44.5    
44.8    
45.0    
45.2    
45.5    
45.8    
46.0    
46.2    
46.5    
46.8    
47.0    
47.2    
47.5    
47.8    
48.0    
48.2    
48.5    
48.8    
49.0    
49.2    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.5    
51.7    
52.0    
52.2    
52.5    
52.8    
53.0    
53.2    
53.5    
53.8    
54.0    
54.2    
54.5    
54.8    
55.0    
55.2    
55.5    
55.8    
56.0    
56.2    
56.5    
56.8    
57.0    
57.2    
57.5    
57.8    
58.0    
58.2    
58.5    
58.8    
59.0    
59.2    
59.5    
59.8    
60.0    
60.2    
60.5    
60.8    
61.0    
61.3    
61.5    
61.8    
62.0    
62.3    
62.5    
62.7    
63.0    
63.2    
63.5    
63.7    
64.0    
64.2    
64.5    
64.8    
65.0    
65.2    
65.5    
65.8    
66.0    
66.2    
66.5    
66.8    
67.0    
67.2    
67.5    
67.8    
68.0    
68.2    
68.5    
68.8    
69.0    
69.2    
69.5    
69.8    
70.0    
70.2    
70.5    
70.8    
71.0    
71.2    
71.5    
71.8    
72.0    
72.2    
72.5    
72.8    
73.0    
73.2    
73.5    
73.8    
74.0    
74.2    
74.5    
74.8    
75.0    
75.2    
75.5    
75.8    
76.0    
76.2    
76.5    
76.8    
77.0    
77.2    
77.5    
77.8    
78.0    
78.2    
78.5    
78.8    
79.0    
79.2    
79.5    
79.8    
80.0    
80.2    
80.5    
80.8    
81.0    
81.2    
81.5    
81.8    
82.0    
82.2    
82.5    
82.8    
83.0    
83.2    
83.5    
83.8    
84.0    
84.2    
84.5    
84.8    
85.0    
85.2    
85.5    
85.8    
86.0    
86.2    
86.5    
86.8    
87.0    
87.2    
87.5    
87.8    
88.0    
88.2    
88.5    
88.8    
89.0    
89.2    
89.5    
89.8    
90.0    
90.2    
90.5    
90.8    
91.0    
91.2    
91.5    
91.8    
92.0    
92.2    
92.5    
92.8    
93.0    
93.2    
93.5    
93.8    
94.0    
94.2    
94.5    
94.8    
95.0    
95.2    
95.5    
95.8    
96.0    
96.2    
96.5    
96.8    
97.0    
97.2    
97.5    
97.8    
98.0    
98.2    
98.5    
98.8    
99.0    
99.2    
99.5    
99.8    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 17649, rend_intergenic: 12617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76082, rend_intergenic: 73300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126123, rend_intergenic: 125312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138173, rend_intergenic: 133906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12583
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support