-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_18331002-18540346

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.3562-T1
Valid prediction for snap_scaffold_7-snap.3579-T1
Valid prediction for snap_scaffold_7-snap.3568-T1
Valid prediction for Augustus_model.g13075.t1
Valid prediction for Augustus_model.g13065.t1
Valid prediction for snap_scaffold_7-snap.3575-T1
Valid prediction for GlimmerHMM_glimmerT_19403-T1
Valid prediction for GeneMark_model.32880_t
Valid prediction for GeneMark_model.32873_t
Valid prediction for pasa_asmbl_51408.p1
Valid prediction for snap_scaffold_7-snap.3569-T1
Valid prediction for snap_scaffold_7-snap.3570-T1
Valid prediction for CodingQuarry_transcript_57613-T1
Valid prediction for snap_scaffold_7-snap.3573-T1
Valid prediction for GeneMark_model.32852_t
Valid prediction for GeneMark_model.32865_t
Valid prediction for GeneMark_model.32870_t
Valid prediction for snap_scaffold_7-snap.3597-T1
Valid prediction for GlimmerHMM_glimmerT_19402-T1
Valid prediction for GeneMark_model.32856_t
Valid prediction for snap_scaffold_7-snap.3567-T1
Valid prediction for snap_scaffold_7-snap.3563-T1
Valid prediction for snap_scaffold_7-snap.3561-T1
Valid prediction for snap_scaffold_7-snap.3617-T1
Valid prediction for GeneMark_model.32896_t
Valid prediction for GeneMark_model.32890_t
Valid prediction for GlimmerHMM_glimmerT_19415-T1
Valid prediction for Augustus_model.g13064.t1
Valid prediction for CodingQuarry_transcript_57612-T1
Valid prediction for snap_scaffold_7-snap.3582-T1
Valid prediction for Augustus_model.g13072.t1
Valid prediction for GlimmerHMM_glimmerT_19408-T1
Valid prediction for snap_scaffold_7-snap.3564-T1
Valid prediction for snap_scaffold_7-snap.3601-T1
Valid prediction for Augustus_model.g13076.t1
Valid prediction for Augustus_model.g13074.t1
Valid prediction for HiQ_model.g13073.t1
Valid prediction for snap_scaffold_7-snap.3560-T1
Valid prediction for snap_scaffold_7-snap.3586-T1
Valid prediction for snap_scaffold_7-snap.3606-T1
Valid prediction for GeneMark_model.32848_t
Valid prediction for Augustus_model.g13078.t1
Valid prediction for GlimmerHMM_glimmerT_19416-T1
Valid prediction for GlimmerHMM_glimmerT_19395-T1
Couldn't classify 75738, 75823
Sorry, prediction pasa_asmbl_51410.p1 fails validation.
(ATG)	 GG	69238-69391	GT	AGG
(TGT)	 AG	71320-71496	GT	CAG
(ACA)	 AG	72198-72313	GT	TGG
(GCC)	 AG	72515-72586	GT	GAG
(GGA)	 AG	73918-74131	GT	CTG
(TCT)	 AG	75738-75823	GG	CAG
-recovered pasa_asmbl_51410.p1, initial, 69238, 69391
-recovered pasa_asmbl_51410.p1, internal, 71320, 71496
-recovered pasa_asmbl_51410.p1, internal, 72198, 72313
-recovered pasa_asmbl_51410.p1, internal, 72515, 72586
-recovered pasa_asmbl_51410.p1, internal, 73918, 74131
Valid prediction for snap_scaffold_7-snap.3583-T1
Valid prediction for snap_scaffold_7-snap.3603-T1
Valid prediction for snap_scaffold_7-snap.3602-T1
Valid prediction for GeneMark_model.32840_t
Valid prediction for snap_scaffold_7-snap.3572-T1
Valid prediction for GeneMark_model.32860_t
Valid prediction for GlimmerHMM_glimmerT_19421-T1
Valid prediction for GeneMark_model.32895_t
Valid prediction for snap_scaffold_7-snap.3619-T1
Valid prediction for GeneMark_model.32841_t
Valid prediction for GeneMark_model.32875_t
Valid prediction for GlimmerHMM_glimmerT_19409-T1
Valid prediction for CodingQuarry_transcript_57614-T1
Valid prediction for snap_scaffold_7-snap.3613-T1
Valid prediction for GeneMark_model.32850_t
Valid prediction for snap_scaffold_7-snap.3596-T1
Valid prediction for GlimmerHMM_glimmerT_19424-T1
Valid prediction for snap_scaffold_7-snap.3585-T1
Valid prediction for snap_scaffold_7-snap.3593-T1
Valid prediction for snap_scaffold_7-snap.3609-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.32892_t
Valid prediction for GeneMark_model.32845_t
Valid prediction for GlimmerHMM_glimmerT_19426-T1
Valid prediction for GeneMark_model.32867_t
Valid prediction for GlimmerHMM_glimmerT_19417-T1
Valid prediction for GeneMark_model.32886_t
Couldn't classify 4308, 4730
Sorry, prediction pasa_asmbl_51407.p1 fails validation.
(ACA)	 AG	4308-4730	AG	ACA
Valid prediction for GeneMark_model.32858_t
Valid prediction for HiQ_model.g13071.t1
Valid prediction for GeneMark_model.32876_t
Valid prediction for snap_scaffold_7-snap.3577-T1
Valid prediction for snap_scaffold_7-snap.3615-T1
Valid prediction for GeneMark_model.32888_t
Valid prediction for snap_scaffold_7-snap.3591-T1
Valid prediction for snap_scaffold_7-snap.3612-T1
Valid prediction for GeneMark_model.32882_t
Valid prediction for GeneMark_model.32877_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.32853_t
Valid prediction for GeneMark_model.32863_t
Valid prediction for GlimmerHMM_glimmerT_19428-T1
Valid prediction for GlimmerHMM_glimmerT_19398-T1
Valid prediction for Augustus_model.g13066.t1
Valid prediction for GeneMark_model.32889_t
Valid prediction for GlimmerHMM_glimmerT_19397-T1
Valid prediction for snap_scaffold_7-snap.3614-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.3605-T1
Valid prediction for GlimmerHMM_glimmerT_19425-T1
Valid prediction for GeneMark_model.32874_t
Valid prediction for snap_scaffold_7-snap.3566-T1
Valid prediction for snap_scaffold_7-snap.3580-T1
Valid prediction for snap_scaffold_7-snap.3571-T1
Valid prediction for GlimmerHMM_glimmerT_19400-T1
Valid prediction for GeneMark_model.32857_t
Valid prediction for GeneMark_model.32866_t
Valid prediction for GlimmerHMM_glimmerT_19407-T1
Valid prediction for snap_scaffold_7-snap.3588-T1
Valid prediction for GlimmerHMM_glimmerT_19401-T1
Valid prediction for GeneMark_model.32869_t
Valid prediction for GeneMark_model.32871_t
Valid prediction for GeneMark_model.32849_t
Valid prediction for GeneMark_model.32846_t
Valid prediction for Augustus_model.g13077.t1
Valid prediction for snap_scaffold_7-snap.3578-T1
Valid prediction for Augustus_model.g13079.t1
Valid prediction for GlimmerHMM_glimmerT_19420-T1
Valid prediction for snap_scaffold_7-snap.3604-T1
Valid prediction for snap_scaffold_7-snap.3565-T1
Valid prediction for GeneMark_model.32864_t
Valid prediction for GeneMark_model.32893_t
Valid prediction for GlimmerHMM_glimmerT_19411-T1
Valid prediction for snap_scaffold_7-snap.3589-T1
Valid prediction for GlimmerHMM_glimmerT_19423-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.3610-T1
Valid prediction for snap_scaffold_7-snap.3616-T1
Valid prediction for GlimmerHMM_glimmerT_19396-T1
Valid prediction for GlimmerHMM_glimmerT_19413-T1
Valid prediction for Augustus_model.g13068.t1
Valid prediction for snap_scaffold_7-snap.3592-T1
Valid prediction for GeneMark_model.32851_t
Valid prediction for snap_scaffold_7-snap.3608-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.3599-T1
Valid prediction for GeneMark_model.32884_t
Valid prediction for snap_scaffold_7-snap.3618-T1
Valid prediction for snap_scaffold_7-snap.3595-T1
Valid prediction for GlimmerHMM_glimmerT_19414-T1
Valid prediction for GeneMark_model.32872_t
Valid prediction for snap_scaffold_7-snap.3600-T1
Valid prediction for snap_scaffold_7-snap.3574-T1
Valid prediction for snap_scaffold_7-snap.3607-T1
Valid prediction for snap_scaffold_7-snap.3590-T1
Valid prediction for snap_scaffold_7-snap.3576-T1
Valid prediction for GeneMark_model.32881_t
Valid prediction for snap_scaffold_7-snap.3598-T1
Valid prediction for GlimmerHMM_glimmerT_19422-T1
Valid prediction for GlimmerHMM_glimmerT_19405-T1
Valid prediction for GeneMark_model.32885_t
Valid prediction for GeneMark_model.32854_t
Valid prediction for pasa_asmbl_50279.p1
Valid prediction for GeneMark_model.32843_t
Couldn't classify 165594, 165665
Couldn't classify 168346, 168481
Sorry, prediction pasa_asmbl_50286.p1 fails validation.
(AGG)	 AG	165594-165665	GT	TGG
(ATG)	 AG	165776-165891	GT	AGG
(GAG)	 AG	168346-168481	GT	TGG
-recovered pasa_asmbl_50286.p1, initial, 165776, 165891
-recovered pasa_asmbl_50286.p1, internal, 165594, 165665
-recovered pasa_asmbl_50286.p1, internal, 165776, 165891
-recovered pasa_asmbl_50286.p1, internal, 168346, 168481
Valid prediction for GeneMark_model.32861_t
Valid prediction for snap_scaffold_7-snap.3611-T1
Valid prediction for GlimmerHMM_glimmerT_19418-T1
Valid prediction for GeneMark_model.32847_t
Valid prediction for snap_scaffold_7-snap.3621-T1
Valid prediction for GlimmerHMM_glimmerT_19406-T1
Valid prediction for snap_scaffold_7-snap.3584-T1
Valid prediction for GlimmerHMM_glimmerT_19404-T1
Valid prediction for Augustus_model.g13067.t1
Valid prediction for GeneMark_model.32842_t
Valid prediction for GeneMark_model.32878_t
Valid prediction for GlimmerHMM_glimmerT_19399-T1
Valid prediction for GeneMark_model.32862_t
Valid prediction for GeneMark_model.32859_t
Couldn't classify 186884, 187939
Sorry, prediction pasa_asmbl_50282.p1 fails validation.
(GTG)	 AT	186884-187939	GA	GAG
Couldn't classify 162805, 162891
Sorry, prediction pasa_asmbl_50287.p1 fails validation.
(ATG)	 CC	154786-155283	GT	AGG
(GTT)	 AG	156475-156567	GT	AGG
(ATA)	 AG	158835-159074	GT	AGG
(GAT)	 AG	161201-161287	GT	AGG
(ACA)	 AG	161875-162066	GT	AGG
(CAG)	 AG	162805-162891	AG	TGA
-recovered pasa_asmbl_50287.p1, initial, 154786, 155283
-recovered pasa_asmbl_50287.p1, internal, 156475, 156567
-recovered pasa_asmbl_50287.p1, internal, 158835, 159074
-recovered pasa_asmbl_50287.p1, internal, 161201, 161287
-recovered pasa_asmbl_50287.p1, internal, 161875, 162066
Valid prediction for snap_scaffold_7-snap.3581-T1
Couldn't classify 183755, 183829
Sorry, prediction pasa_asmbl_50284.p1 fails validation.
(ATG)	 GG	174724-174818	GT	AGG
(CAG)	 AG	175284-175380	GT	AGG
(ACC)	 AG	176130-176279	GT	AGG
(GAA)	 AG	176532-176681	GT	GAG
(GCT)	 AG	177280-177536	GT	AAG
(GTA)	 AG	179526-179664	GC	AGG
(GCT)	 AG	179719-179790	GT	AGG
(CCT)	 AG	179980-180171	GT	GGG
(CAT)	 AG	180513-180665	GT	AGG
(ATC)	 AG	181673-181890	GT	ATG
(ATC)	 AG	182046-182229	GT	CGG
(ATC)	 AG	182661-182816	GT	CGG
(AAC)	 AG	182942-183484	GT	GGG
(CCC)	 AG	183755-183829	AA	AGA
-recovered pasa_asmbl_50284.p1, initial, 174724, 174818
-recovered pasa_asmbl_50284.p1, internal, 175284, 175380
-recovered pasa_asmbl_50284.p1, internal, 176130, 176279
-recovered pasa_asmbl_50284.p1, internal, 176532, 176681
-recovered pasa_asmbl_50284.p1, internal, 177280, 177536
-recovered pasa_asmbl_50284.p1, internal, 179526, 179664
-recovered pasa_asmbl_50284.p1, internal, 179719, 179790
-recovered pasa_asmbl_50284.p1, internal, 179980, 180171
-recovered pasa_asmbl_50284.p1, internal, 180513, 180665
-recovered pasa_asmbl_50284.p1, internal, 181673, 181890
-recovered pasa_asmbl_50284.p1, internal, 182046, 182229
-recovered pasa_asmbl_50284.p1, internal, 182661, 182816
-recovered pasa_asmbl_50284.p1, internal, 182942, 183484
Valid prediction for GeneMark_model.32894_t
Valid prediction for HiQ_model.g13070.t1
Valid prediction for Augustus_model.g13069.t1
Valid prediction for GeneMark_model.32868_t
Valid prediction for GeneMark_model.32879_t
Valid prediction for GlimmerHMM_glimmerT_19410-T1
Valid prediction for GlimmerHMM_glimmerT_19412-T1
Valid prediction for snap_scaffold_7-snap.3587-T1
Valid prediction for GeneMark_model.32891_t
Valid prediction for GlimmerHMM_glimmerT_19427-T1
Valid prediction for snap_scaffold_7-snap.3620-T1
Valid prediction for GlimmerHMM_glimmerT_19419-T1
Valid prediction for snap_scaffold_7-snap.3594-T1
Valid prediction for GeneMark_model.32883_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16179, rend_intergenic: 11325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29058, rend_intergenic: 17148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29107, rend_intergenic: 29097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34695, rend_intergenic: 29125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36929, rend_intergenic: 35608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40928, rend_intergenic: 37747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48868, rend_intergenic: 47144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75940, rend_intergenic: 72614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96160, rend_intergenic: 83232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99073, rend_intergenic: 96610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102616, rend_intergenic: 100917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114837, rend_intergenic: 111559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120148, rend_intergenic: 115111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160068, rend_intergenic: 156012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170242, rend_intergenic: 163626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179479, rend_intergenic: 174937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182918, rend_intergenic: 181492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189428, rend_intergenic: 186767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189930, rend_intergenic: 189565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198697, rend_intergenic: 193054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 209345
-exon list size: 834


building trellis

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45.8    
45.9    
46.1    
46.2    
46.3    
46.4    
46.5    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.6    
49.8    
49.9    
50.0    
50.1    
50.2    
50.4    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.9    
56.0    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.8    
56.9    
57.1    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.8    
62.0    
62.1    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
62.9    
63.0    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
67.9    
68.1    
68.2    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.0    
69.1    
69.3    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.3    
73.4    
73.6    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.8    
85.9    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.1    
89.2    
89.4    
89.5    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
92.9    
93.1    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.5    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 16179, rend_intergenic: 11325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29058, rend_intergenic: 17148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29107, rend_intergenic: 29097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34695, rend_intergenic: 29125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36929, rend_intergenic: 35608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40928, rend_intergenic: 37747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48868, rend_intergenic: 47144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75940, rend_intergenic: 72614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96160, rend_intergenic: 83232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99073, rend_intergenic: 96610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102616, rend_intergenic: 100917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114837, rend_intergenic: 111559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120148, rend_intergenic: 115111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160068, rend_intergenic: 156012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170242, rend_intergenic: 163626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179479, rend_intergenic: 174937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182918, rend_intergenic: 181492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189428, rend_intergenic: 186767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189930, rend_intergenic: 189565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198697, rend_intergenic: 193054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 197652 - 209345
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 199022 - 209345
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support