-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_17005588-17135011

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.32492_t
Valid prediction for GeneMark_model.32488_t
Valid prediction for snap_scaffold_7-snap.3269-T1
Valid prediction for snap_scaffold_7-snap.3277-T1
Valid prediction for snap_scaffold_7-snap.3263-T1
Valid prediction for GeneMark_model.32455_t
Valid prediction for GeneMark_model.32472_t
Valid prediction for GlimmerHMM_glimmerT_19210-T1
Valid prediction for GeneMark_model.32471_t
Valid prediction for GeneMark_model.32474_t
Valid prediction for GeneMark_model.32491_t
Valid prediction for GlimmerHMM_glimmerT_19212-T1
Valid prediction for snap_scaffold_7-snap.3272-T1
Valid prediction for GlimmerHMM_glimmerT_19209-T1
Valid prediction for Augustus_model.g12990.t1
Valid prediction for snap_scaffold_7-snap.3267-T1
Valid prediction for Augustus_model.g12988.t1
Valid prediction for GlimmerHMM_glimmerT_19220-T1
Valid prediction for Augustus_model.g12983.t1
Valid prediction for GeneMark_model.32454_t
Valid prediction for GeneMark_model.32460_t
Valid prediction for snap_scaffold_7-snap.3260-T1
Valid prediction for GlimmerHMM_glimmerT_19216-T1
Valid prediction for GeneMark_model.32469_t
Valid prediction for GlimmerHMM_glimmerT_19221-T1
Valid prediction for snap_scaffold_7-snap.3278-T1
Valid prediction for GeneMark_model.32461_t
Valid prediction for GlimmerHMM_glimmerT_19211-T1
Valid prediction for GeneMark_model.32484_t
Valid prediction for GeneMark_model.32458_t
Valid prediction for snap_scaffold_7-snap.3282-T1
Valid prediction for Augustus_model.g12987.t1
Valid prediction for GlimmerHMM_glimmerT_19218-T1
Valid prediction for GeneMark_model.32481_t
Valid prediction for snap_scaffold_7-snap.3274-T1
Valid prediction for Augustus_model.g12989.t1
Valid prediction for GeneMark_model.32478_t
Valid prediction for GeneMark_model.32482_t
Valid prediction for GeneMark_model.32464_t
Valid prediction for GeneMark_model.32476_t
Valid prediction for snap_scaffold_7-snap.3284-T1
Valid prediction for Augustus_model.g12986.t1
Valid prediction for GlimmerHMM_glimmerT_19214-T1
Valid prediction for snap_scaffold_7-snap.3280-T1
Valid prediction for GlimmerHMM_glimmerT_19205-T1
Valid prediction for snap_scaffold_7-snap.3264-T1
Valid prediction for GlimmerHMM_glimmerT_19208-T1
Valid prediction for GeneMark_model.32480_t
Valid prediction for snap_scaffold_7-snap.3271-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.3276-T1
Valid prediction for GlimmerHMM_glimmerT_19222-T1
Valid prediction for GeneMark_model.32456_t
Valid prediction for GeneMark_model.32489_t
Valid prediction for GeneMark_model.32463_t
Valid prediction for snap_scaffold_7-snap.3268-T1
Valid prediction for GeneMark_model.32473_t
Valid prediction for GeneMark_model.32462_t
Valid prediction for Augustus_model.g12984.t1
Valid prediction for snap_scaffold_7-snap.3262-T1
Valid prediction for Augustus_model.g12982.t1
Valid prediction for GeneMark_model.32475_t
Valid prediction for GeneMark_model.32483_t
Valid prediction for snap_scaffold_7-snap.3265-T1
Valid prediction for GlimmerHMM_glimmerT_19215-T1
Valid prediction for snap_scaffold_7-snap.3285-T1
Valid prediction for snap_scaffold_7-snap.3270-T1
Valid prediction for GlimmerHMM_glimmerT_19224-T1
Valid prediction for GeneMark_model.32457_t
Valid prediction for GeneMark_model.32465_t
Valid prediction for GlimmerHMM_glimmerT_19223-T1
Valid prediction for GlimmerHMM_glimmerT_19225-T1
Valid prediction for snap_scaffold_7-snap.3273-T1
Valid prediction for snap_scaffold_7-snap.3279-T1
Valid prediction for GlimmerHMM_glimmerT_19206-T1
Valid prediction for snap_scaffold_7-snap.3275-T1
Valid prediction for GeneMark_model.32479_t
Valid prediction for GeneMark_model.32490_t
Valid prediction for GeneMark_model.32470_t
Valid prediction for GeneMark_model.32477_t
Valid prediction for GeneMark_model.32468_t
Valid prediction for snap_scaffold_7-snap.3283-T1
Valid prediction for GlimmerHMM_glimmerT_19207-T1
Valid prediction for snap_scaffold_7-snap.3261-T1
Valid prediction for GeneMark_model.32466_t
Valid prediction for snap_scaffold_7-snap.3266-T1
Valid prediction for snap_scaffold_7-snap.3281-T1
Valid prediction for GlimmerHMM_glimmerT_19217-T1
Valid prediction for GlimmerHMM_glimmerT_19219-T1
Valid prediction for GeneMark_model.32485_t
Valid prediction for snap_scaffold_7-snap.3258-T1
Valid prediction for snap_scaffold_7-snap.3257-T1
Valid prediction for GlimmerHMM_glimmerT_19213-T1
Valid prediction for Augustus_model.g12985.t1
Valid prediction for snap_scaffold_7-snap.3259-T1
Valid prediction for GeneMark_model.32487_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 36905, rend_intergenic: 31777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40816, rend_intergenic: 37010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52169, rend_intergenic: 51327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54375, rend_intergenic: 52493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60334, rend_intergenic: 54706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100953, rend_intergenic: 98610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 129424
-exon list size: 436


building trellis

0.2    
0.5    
0.7    
0.9    
1.1    
1.4    
1.6    
1.8    
2.1    
2.3    
2.5    
2.7    
3.0    
3.2    
3.4    
3.7    
3.9    
4.1    
4.3    
4.6    
4.8    
5.0    
5.3    
5.5    
5.7    
5.9    
6.2    
6.4    
6.6    
6.8    
7.1    
7.3    
7.5    
7.8    
8.0    
8.2    
8.4    
8.7    
8.9    
9.1    
9.4    
9.6    
9.8    
10.0    
10.3    
10.5    
10.7    
11.0    
11.2    
11.4    
11.6    
11.9    
12.1    
12.3    
12.6    
12.8    
13.0    
13.2    
13.5    
13.7    
13.9    
14.2    
14.4    
14.6    
14.8    
15.1    
15.3    
15.5    
15.8    
16.0    
16.2    
16.4    
16.7    
16.9    
17.1    
17.4    
17.6    
17.8    
18.0    
18.3    
18.5    
18.7    
18.9    
19.2    
19.4    
19.6    
19.9    
20.1    
20.3    
20.5    
20.8    
21.0    
21.2    
21.5    
21.7    
21.9    
22.1    
22.4    
22.6    
22.8    
23.1    
23.3    
23.5    
23.7    
24.0    
24.2    
24.4    
24.7    
24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.3    
26.5    
26.7    
26.9    
27.2    
27.4    
27.6    
27.9    
28.1    
28.3    
28.5    
28.8    
29.0    
29.2    
29.5    
29.7    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.7    
32.0    
32.2    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.2    
34.5    
34.7    
34.9    
35.2    
35.4    
35.6    
35.8    
36.1    
36.3    
36.5    
36.8    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.4    
38.6    
38.8    
39.0    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.9    
41.1    
41.3    
41.6    
41.8    
42.0    
42.2    
42.5    
42.7    
42.9    
43.2    
43.4    
43.6    
43.8    
44.1    
44.3    
44.5    
44.7    
45.0    
45.2    
45.4    
45.7    
45.9    
46.1    
46.3    
46.6    
46.8    
47.0    
47.3    
47.5    
47.7    
47.9    
48.2    
48.4    
48.6    
48.9    
49.1    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
50.9    
51.1    
51.4    
51.6    
51.8    
52.1    
52.3    
52.5    
52.7    
53.0    
53.2    
53.4    
53.7    
53.9    
54.1    
54.3    
54.6    
54.8    
55.0    
55.3    
55.5    
55.7    
55.9    
56.2    
56.4    
56.6    
56.8    
57.1    
57.3    
57.5    
57.8    
58.0    
58.2    
58.4    
58.7    
58.9    
59.1    
59.4    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
61.0    
61.2    
61.4    
61.6    
61.9    
62.1    
62.3    
62.6    
62.8    
63.0    
63.2    
63.5    
63.7    
63.9    
64.2    
64.4    
64.6    
64.8    
65.1    
65.3    
65.5    
65.8    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.8    
68.0    
68.3    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.3    
70.5    
70.8    
71.0    
71.2    
71.5    
71.7    
71.9    
72.1    
72.4    
72.6    
72.8    
73.1    
73.3    
73.5    
73.7    
74.0    
74.2    
74.4    
74.7    
74.9    
75.1    
75.3    
75.6    
75.8    
76.0    
76.3    
76.5    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.3    
78.5    
78.8    
79.0    
79.2    
79.5    
79.7    
79.9    
80.1    
80.4    
80.6    
80.8    
81.1    
81.3    
81.5    
81.7    
82.0    
82.2    
82.4    
82.6    
82.9    
83.1    
83.3    
83.6    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.8    
86.1    
86.3    
86.5    
86.8    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.4    
88.6    
88.8    
89.0    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.6    
90.9    
91.1    
91.3    
91.6    
91.8    
92.0    
92.2    
92.5    
92.7    
92.9    
93.2    
93.4    
93.6    
93.8    
94.1    
94.3    
94.5    
94.7    
95.0    
95.2    
95.4    
95.7    
95.9    
96.1    
96.3    
96.6    
96.8    
97.0    
97.3    
97.5    
97.7    
97.9    
98.2    
98.4    
98.6    
98.9    
99.1    
99.3    
99.5    
99.8    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 36905, rend_intergenic: 31777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40816, rend_intergenic: 37010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52169, rend_intergenic: 51327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54375, rend_intergenic: 52493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60334, rend_intergenic: 54706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100953, rend_intergenic: 98610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support