-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_16847727-17007907

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19185-T1
Valid prediction for snap_scaffold_7-snap.3235-T1
Valid prediction for GeneMark_model.32423_t
Valid prediction for GeneMark_model.32416_t
Valid prediction for GeneMark_model.32438_t
Valid prediction for GeneMark_model.32432_t
Valid prediction for snap_scaffold_7-snap.3223-T1
Valid prediction for Augustus_model.g12975.t1
Valid prediction for GeneMark_model.32417_t
Valid prediction for GeneMark_model.32429_t
Valid prediction for GeneMark_model.32404_t
Valid prediction for GeneMark_model.32452_t
Valid prediction for GeneMark_model.32442_t
Valid prediction for GeneMark_model.32436_t
Valid prediction for GlimmerHMM_glimmerT_19195-T1
Valid prediction for snap_scaffold_7-snap.3254-T1
Valid prediction for GlimmerHMM_glimmerT_19192-T1
Valid prediction for snap_scaffold_7-snap.3250-T1
Valid prediction for GeneMark_model.32400_t
Valid prediction for Augustus_model.g12971.t1
Valid prediction for GeneMark_model.32421_t
Valid prediction for GeneMark_model.32447_t
Valid prediction for snap_scaffold_7-snap.3256-T1
Valid prediction for GeneMark_model.32418_t
Valid prediction for snap_scaffold_7-snap.3255-T1
Valid prediction for snap_scaffold_7-snap.3236-T1
Valid prediction for GeneMark_model.32411_t
Valid prediction for Augustus_model.g12981.t1
Valid prediction for GeneMark_model.32406_t
Valid prediction for snap_scaffold_7-snap.3247-T1
Valid prediction for snap_scaffold_7-snap.3244-T1
Valid prediction for GlimmerHMM_glimmerT_19197-T1
Valid prediction for snap_scaffold_7-snap.3241-T1
Valid prediction for snap_scaffold_7-snap.3245-T1
Valid prediction for Augustus_model.g12974.t1
Valid prediction for snap_scaffold_7-snap.3227-T1
Valid prediction for snap_scaffold_7-snap.3219-T1
Valid prediction for snap_scaffold_7-snap.3238-T1
Valid prediction for GeneMark_model.32426_t
Valid prediction for Augustus_model.g12977.t1
Valid prediction for GeneMark_model.32415_t
Valid prediction for Augustus_model.g12968.t1
Valid prediction for GeneMark_model.32413_t
Valid prediction for GeneMark_model.32424_t
Valid prediction for snap_scaffold_7-snap.3240-T1
Valid prediction for GlimmerHMM_glimmerT_19184-T1
Valid prediction for snap_scaffold_7-snap.3222-T1
Valid prediction for GeneMark_model.32449_t
Valid prediction for snap_scaffold_7-snap.3229-T1
Valid prediction for GeneMark_model.32434_t
Valid prediction for GeneMark_model.32408_t
Valid prediction for snap_scaffold_7-snap.3225-T1
Valid prediction for snap_scaffold_7-snap.3233-T1
Valid prediction for GlimmerHMM_glimmerT_19200-T1
Valid prediction for GeneMark_model.32427_t
Valid prediction for GeneMark_model.32444_t
Valid prediction for GlimmerHMM_glimmerT_19196-T1
Valid prediction for GlimmerHMM_glimmerT_19188-T1
Valid prediction for snap_scaffold_7-snap.3228-T1
Valid prediction for GlimmerHMM_glimmerT_19203-T1
Valid prediction for snap_scaffold_7-snap.3251-T1
Valid prediction for GeneMark_model.32431_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.3231-T1
Valid prediction for snap_scaffold_7-snap.3246-T1
Valid prediction for snap_scaffold_7-snap.3237-T1
Valid prediction for GlimmerHMM_glimmerT_19201-T1
Valid prediction for snap_scaffold_7-snap.3242-T1
Valid prediction for GeneMark_model.32428_t
Valid prediction for snap_scaffold_7-snap.3253-T1
Valid prediction for GeneMark_model.32440_t
Valid prediction for Augustus_model.g12970.t1
Valid prediction for snap_scaffold_7-snap.3224-T1
Valid prediction for snap_scaffold_7-snap.3249-T1
Valid prediction for snap_scaffold_7-snap.3220-T1
Valid prediction for GeneMark_model.32451_t
Valid prediction for GeneMark_model.32425_t
Valid prediction for GlimmerHMM_glimmerT_19194-T1
Valid prediction for GlimmerHMM_glimmerT_19191-T1
Valid prediction for GeneMark_model.32414_t
Valid prediction for GlimmerHMM_glimmerT_19190-T1
Valid prediction for Augustus_model.g12973.t1
Valid prediction for snap_scaffold_7-snap.3226-T1
Valid prediction for GeneMark_model.32437_t
Valid prediction for snap_scaffold_7-snap.3221-T1
Valid prediction for GeneMark_model.32410_t
Valid prediction for GeneMark_model.32443_t
Valid prediction for GeneMark_model.32453_t
Valid prediction for GeneMark_model.32412_t
Valid prediction for snap_scaffold_7-snap.3232-T1
Valid prediction for snap_scaffold_7-snap.3239-T1
Valid prediction for GeneMark_model.32420_t
Valid prediction for GeneMark_model.32446_t
Valid prediction for GeneMark_model.32419_t
Valid prediction for Augustus_model.g12976.t1
Valid prediction for GeneMark_model.32402_t
Valid prediction for GeneMark_model.32435_t
Valid prediction for GeneMark_model.32407_t
Valid prediction for GeneMark_model.32445_t
Valid prediction for GlimmerHMM_glimmerT_19187-T1
Valid prediction for GeneMark_model.32448_t
Valid prediction for GeneMark_model.32430_t
Valid prediction for GlimmerHMM_glimmerT_19193-T1
Valid prediction for GlimmerHMM_glimmerT_19202-T1
Valid prediction for snap_scaffold_7-snap.3248-T1
Valid prediction for Augustus_model.g12978.t1
Valid prediction for snap_scaffold_7-snap.3230-T1
Valid prediction for GeneMark_model.32422_t
Valid prediction for Augustus_model.g12980.t1
Valid prediction for Augustus_model.g12969.t1
Valid prediction for GeneMark_model.32439_t
Valid prediction for GeneMark_model.32409_t
Valid prediction for Augustus_model.g12979.t1
Valid prediction for Augustus_model.g12972.t1
Valid prediction for snap_scaffold_7-snap.3243-T1
Valid prediction for GlimmerHMM_glimmerT_19186-T1
Valid prediction for GeneMark_model.32405_t
Valid prediction for GeneMark_model.32450_t
Valid prediction for GeneMark_model.32433_t
Valid prediction for GlimmerHMM_glimmerT_19198-T1
Valid prediction for snap_scaffold_7-snap.3252-T1
Valid prediction for GeneMark_model.32403_t
Valid prediction for GeneMark_model.32401_t
Valid prediction for GeneMark_model.32441_t
Valid prediction for GlimmerHMM_glimmerT_19189-T1
Valid prediction for GlimmerHMM_glimmerT_19199-T1
Valid prediction for snap_scaffold_7-snap.3234-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7866, rend_intergenic: 3850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16237, rend_intergenic: 9363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49772, rend_intergenic: 35226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66187, rend_intergenic: 49894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71619, rend_intergenic: 70356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75534, rend_intergenic: 71736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84249, rend_intergenic: 79195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87441, rend_intergenic: 85287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92780, rend_intergenic: 88959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95871, rend_intergenic: 93763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114385, rend_intergenic: 111526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117403, rend_intergenic: 114657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128852, rend_intergenic: 122804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135480, rend_intergenic: 130332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146520, rend_intergenic: 136186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 160181
-exon list size: 680


building trellis

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-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 7866, rend_intergenic: 3850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16237, rend_intergenic: 9363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49772, rend_intergenic: 35226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66187, rend_intergenic: 49894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71619, rend_intergenic: 70356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75534, rend_intergenic: 71736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84249, rend_intergenic: 79195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87441, rend_intergenic: 85287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92780, rend_intergenic: 88959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95871, rend_intergenic: 93763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114385, rend_intergenic: 111526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117403, rend_intergenic: 114657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128852, rend_intergenic: 122804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135480, rend_intergenic: 130332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146520, rend_intergenic: 136186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 145531 - 160181
-exon list size: 32


building trellis

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38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support