-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_14938433-15160691

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g12839.t1
Valid prediction for GeneMark_model.31887_t
Valid prediction for snap_scaffold_7-snap.2845-T1
Valid prediction for GlimmerHMM_glimmerT_19004-T1
Valid prediction for GeneMark_model.31914_t
Valid prediction for GeneMark_model.31927_t
Valid prediction for snap_scaffold_7-snap.2878-T1
Valid prediction for GeneMark_model.31906_t
Valid prediction for Augustus_model.g12851.t1
Valid prediction for GeneMark_model.31907_t
Valid prediction for GeneMark_model.31898_t
Valid prediction for Augustus_model.g12842.t1
Valid prediction for snap_scaffold_7-snap.2862-T1
Valid prediction for snap_scaffold_7-snap.2863-T1
Valid prediction for CodingQuarry_transcript_57572-T1
Valid prediction for GlimmerHMM_glimmerT_18996-T1
Valid prediction for GeneMark_model.31922_t
Valid prediction for GeneMark_model.31917_t
Valid prediction for GeneMark_model.31885_t
Valid prediction for snap_scaffold_7-snap.2841-T1
Valid prediction for GlimmerHMM_glimmerT_18999-T1
Couldn't classify 48324, 48392
Couldn't classify 50824, 50948
Sorry, prediction pasa_asmbl_51504.p1 fails validation.
(ACT)	 AG	48324-48392	GT	AGG
(ATG)	 AG	48523-48613	GT	CAG
(AGG)	 AG	49231-49373	GT	AGG
(GTG)	 AG	50310-50490	GT	AGG
(AGG)	 AG	50824-50948	AT	ACA
-recovered pasa_asmbl_51504.p1, initial, 48523, 48613
-recovered pasa_asmbl_51504.p1, internal, 48324, 48392
-recovered pasa_asmbl_51504.p1, internal, 48523, 48613
-recovered pasa_asmbl_51504.p1, internal, 49231, 49373
-recovered pasa_asmbl_51504.p1, internal, 50310, 50490
Valid prediction for GeneMark_model.31897_t
Valid prediction for GeneMark_model.31930_t
Valid prediction for GeneMark_model.31912_t
Valid prediction for GeneMark_model.31886_t
Valid prediction for GeneMark_model.31904_t
Valid prediction for GlimmerHMM_glimmerT_18986-T1
Valid prediction for snap_scaffold_7-snap.2855-T1
Valid prediction for snap_scaffold_7-snap.2853-T1
Valid prediction for snap_scaffold_7-snap.2864-T1
Valid prediction for snap_scaffold_7-snap.2848-T1
Valid prediction for snap_scaffold_7-snap.2840-T1
Valid prediction for GeneMark_model.31901_t
Valid prediction for GlimmerHMM_glimmerT_18985-T1
Valid prediction for GeneMark_model.31929_t
Valid prediction for snap_scaffold_7-snap.2871-T1
Valid prediction for snap_scaffold_7-snap.2860-T1
Valid prediction for GlimmerHMM_glimmerT_18994-T1
Couldn't classify 58693, 58825
Sorry, prediction pasa_asmbl_51292.p1 fails validation.
(AGG)	 CC	58693-58825	GT	ACG
(TCA)	 AG	59193-59308	GT	CGG
(CGC)	 AG	61905-61979	GT	AGG
(GTG)	 AG	62344-62428	GT	CAG
(ATA)	 AG	63068-63210	GT	CTG
(GAG)	 AG	64802-64876	CT	AAC
-recovered pasa_asmbl_51292.p1, terminal, 64802, 64876
-recovered pasa_asmbl_51292.p1, internal, 59193, 59308
-recovered pasa_asmbl_51292.p1, internal, 61905, 61979
-recovered pasa_asmbl_51292.p1, internal, 62344, 62428
-recovered pasa_asmbl_51292.p1, internal, 63068, 63210
Couldn't classify 27261, 27359
Couldn't classify 34139, 34256
Sorry, prediction pasa_asmbl_51290.p1 fails validation.
(GGC)	 AG	27261-27359	GT	AGG
(GAA)	 AG	27687-27780	GT	GTG
(TGT)	 AG	28561-28630	GT	AAG
(GTC)	 AG	29790-29817	GT	AGG
(ATC)	 AG	30332-30386	GT	TGG
(AGG)	 AG	31755-31861	GT	AGG
(GGA)	 AG	32416-32493	GT	AGG
(GCT)	 AG	32852-32914	GT	ATG
(GAC)	 AG	33030-33143	GT	AGG
(AAA)	 AG	33897-34027	GT	ATG
(GAG)	 AG	34139-34256	GG	AGG
-recovered pasa_asmbl_51290.p1, internal, 27261, 27359
-recovered pasa_asmbl_51290.p1, internal, 27687, 27780
-recovered pasa_asmbl_51290.p1, internal, 28561, 28630
-recovered pasa_asmbl_51290.p1, internal, 29790, 29817
-recovered pasa_asmbl_51290.p1, internal, 30332, 30386
-recovered pasa_asmbl_51290.p1, internal, 31755, 31861
-recovered pasa_asmbl_51290.p1, internal, 32416, 32493
-recovered pasa_asmbl_51290.p1, internal, 32852, 32914
-recovered pasa_asmbl_51290.p1, internal, 33030, 33143
-recovered pasa_asmbl_51290.p1, internal, 33897, 34027
Couldn't classify 18928, 19160
Couldn't classify 22746, 22855
Sorry, prediction pasa_asmbl_51289.p1 fails validation.
(TTT)	 AC	18928-19160	GT	AGG
(GTG)	 AG	19938-20146	GT	AGG
(GCT)	 AG	20402-20524	GT	GGG
(GGG)	 AG	20907-21028	GT	GGG
(GTA)	 AG	21182-21240	GT	AGG
(CAC)	 AG	21325-21411	GT	GGG
(GGA)	 AG	21554-21680	GT	AGG
(ACC)	 AG	21857-22001	GT	AGG
(ATG)	 AG	22268-22425	GT	TGG
(CCT)	 AG	22518-22623	GT	AGG
(CTA)	 AG	22746-22855	GG	GTG
add_exon() Sorry, pasa_asmbl_51289.p1 22268-22425-initial-1 is invalid.
-recovered pasa_asmbl_51289.p1, initial, 22268, 22425
-recovered pasa_asmbl_51289.p1, internal, 19938, 20146
-recovered pasa_asmbl_51289.p1, internal, 20402, 20524
-recovered pasa_asmbl_51289.p1, internal, 20907, 21028
-recovered pasa_asmbl_51289.p1, internal, 21182, 21240
-recovered pasa_asmbl_51289.p1, internal, 21325, 21411
-recovered pasa_asmbl_51289.p1, internal, 21554, 21680
-recovered pasa_asmbl_51289.p1, internal, 21857, 22001
-recovered pasa_asmbl_51289.p1, internal, 22268, 22425
-recovered pasa_asmbl_51289.p1, internal, 22518, 22623
Valid prediction for GlimmerHMM_glimmerT_18988-T1
Valid prediction for GlimmerHMM_glimmerT_18992-T1
Valid prediction for snap_scaffold_7-snap.2873-T1
Valid prediction for GeneMark_model.31926_t
Valid prediction for Augustus_model.g12838.t1
Valid prediction for GeneMark_model.31892_t
Valid prediction for GeneMark_model.31920_t
Valid prediction for Augustus_model.g12836.t1
Valid prediction for GeneMark_model.31910_t
Valid prediction for GlimmerHMM_glimmerT_18990-T1
Valid prediction for snap_scaffold_7-snap.2852-T1
Valid prediction for snap_scaffold_7-snap.2866-T1
Valid prediction for GeneMark_model.31921_t
Valid prediction for GeneMark_model.31895_t
Valid prediction for GeneMark_model.31916_t
Couldn't classify 125772, 125937
Sorry, prediction pasa_asmbl_51294.p1 fails validation.
(AGG)	 CC	125772-125937	GT	GAG
(GCA)	 AG	126161-126268	GT	GAG
(GTA)	 AG	126456-127066	TT	GAT
add_exon() Sorry, pasa_asmbl_51294.p1 126161-126268-terminal-1 is invalid.
-recovered pasa_asmbl_51294.p1, terminal, 126161, 126268
-recovered pasa_asmbl_51294.p1, terminal, 126456, 127066
-recovered pasa_asmbl_51294.p1, internal, 126161, 126268
Valid prediction for snap_scaffold_7-snap.2843-T1
Valid prediction for GlimmerHMM_glimmerT_19003-T1
Valid prediction for GlimmerHMM_glimmerT_18991-T1
Valid prediction for HiQ_model.g12837.t1
Valid prediction for Augustus_model.g12855.t1
Valid prediction for snap_scaffold_7-snap.2859-T1
Valid prediction for snap_scaffold_7-snap.2875-T1
Valid prediction for Augustus_model.g12849.t1
Valid prediction for snap_scaffold_7-snap.2880-T1
Valid prediction for Augustus_model.g12845.t1
Valid prediction for GlimmerHMM_glimmerT_18987-T1
Valid prediction for GeneMark_model.31889_t
Valid prediction for Augustus_model.g12840.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.31908_t
Valid prediction for GlimmerHMM_glimmerT_19005-T1
Valid prediction for Augustus_model.g12853.t1
Valid prediction for snap_scaffold_7-snap.2865-T1
Valid prediction for GlimmerHMM_glimmerT_18997-T1
Valid prediction for CodingQuarry_transcript_57575-T1
Valid prediction for snap_scaffold_7-snap.2876-T1
Valid prediction for GeneMark_model.31902_t
Valid prediction for GeneMark_model.31915_t
Valid prediction for GlimmerHMM_glimmerT_18995-T1
Valid prediction for Augustus_model.g12847.t1
Valid prediction for GeneMark_model.31924_t
Valid prediction for Augustus_model.g12854.t1
Valid prediction for HiQ_model.g12857.t1
Valid prediction for snap_scaffold_7-snap.2844-T1
Valid prediction for GlimmerHMM_glimmerT_18993-T1
Valid prediction for snap_scaffold_7-snap.2847-T1
Valid prediction for GeneMark_model.31931_t
Valid prediction for snap_scaffold_7-snap.2856-T1
Valid prediction for GeneMark_model.31905_t
Valid prediction for snap_scaffold_7-snap.2874-T1
Valid prediction for GeneMark_model.31911_t
Valid prediction for GlimmerHMM_glimmerT_18989-T1
Valid prediction for CodingQuarry_transcript_57573-T1
Valid prediction for Augustus_model.g12852.t1
Valid prediction for snap_scaffold_7-snap.2838-T1
Valid prediction for Augustus_model.g12843.t1
Couldn't classify 77292, 77318
Couldn't classify 77593, 77868
Sorry, prediction pasa_asmbl_50181.p1 fails validation.
(AGC)	 CT	77292-77318	GT	AGG
(CAG)	 AG	77593-77868	AG	AGA
Valid prediction for GeneMark_model.31913_t
Couldn't classify 107098, 107161
Sorry, prediction pasa_asmbl_50176.p1 fails validation.
(CTA)	 CA	107098-107161	GT	AAG
(GAT)	 AG	107419-107567	GT	AGG
(TCT)	 AG	109916-110005	GT	GGG
(ACG)	 AG	110908-111084	AA	GAA
-recovered pasa_asmbl_50176.p1, terminal, 110908, 111084
-recovered pasa_asmbl_50176.p1, internal, 107419, 107567
-recovered pasa_asmbl_50176.p1, internal, 109916, 110005
Valid prediction for Augustus_model.g12856.t1
Valid prediction for GeneMark_model.31919_t
Valid prediction for Augustus_model.g12846.t1
Valid prediction for GeneMark_model.31888_t
Valid prediction for GeneMark_model.31893_t
Valid prediction for GlimmerHMM_glimmerT_19002-T1
Valid prediction for GeneMark_model.31909_t
Valid prediction for snap_scaffold_7-snap.2850-T1
Couldn't classify 116928, 117500
Sorry, prediction pasa_asmbl_50175.p1 fails validation.
(GAC)	 CA	116928-117500	CT	CTC
Valid prediction for GeneMark_model.31896_t
Valid prediction for snap_scaffold_7-snap.2851-T1
Couldn't classify 139606, 139645
Sorry, prediction pasa_asmbl_50169.p1 fails validation.
(TTG)	 CT	139606-139645	GT	AGG
(GTT)	 AG	139729-140000	GT	AGG
(GAA)	 AG	140836-140898	CA	AAC
-recovered pasa_asmbl_50169.p1, terminal, 140836, 140898
-recovered pasa_asmbl_50169.p1, internal, 139729, 140000
Couldn't classify 88796, 89014
Couldn't classify 89653, 90150
Sorry, prediction pasa_asmbl_50180.p1 fails validation.
(AGA)	 CC	88796-89014	GT	AGG
(GTG)	 AG	89653-90150	AC	CCA
Valid prediction for GlimmerHMM_glimmerT_18998-T1
Valid prediction for snap_scaffold_7-snap.2879-T1
Valid prediction for GlimmerHMM_glimmerT_19000-T1
Valid prediction for snap_scaffold_7-snap.2846-T1
Valid prediction for snap_scaffold_7-snap.2861-T1
Valid prediction for GeneMark_model.31894_t
Valid prediction for CodingQuarry_transcript_57574-T1
Valid prediction for snap_scaffold_7-snap.2877-T1
Valid prediction for Augustus_model.g12850.t1
Valid prediction for snap_scaffold_7-snap.2870-T1
Couldn't classify 134005, 134805
Sorry, prediction pasa_asmbl_50170.p1 fails validation.
(CCT)	 TA	134005-134805	AG	AAA
Valid prediction for pasa_asmbl_50171.p2
Valid prediction for snap_scaffold_7-snap.2858-T1
Valid prediction for snap_scaffold_7-snap.2872-T1
Valid prediction for snap_scaffold_7-snap.2867-T1
Valid prediction for GlimmerHMM_glimmerT_18984-T1
Valid prediction for GeneMark_model.31899_t
Valid prediction for GeneMark_model.31923_t
Valid prediction for snap_scaffold_7-snap.2857-T1
Valid prediction for Augustus_model.g12841.t1
Valid prediction for snap_scaffold_7-snap.2842-T1
Valid prediction for snap_scaffold_7-snap.2868-T1
Couldn't classify 36382, 36474
Sorry, prediction pasa_asmbl_50182.p1 fails validation.
(ATG)	 CA	34055-34091	GT	GGG
(GTA)	 AG	34239-34395	GT	AGG
(GCT)	 AG	34565-34688	GT	AAG
(AGC)	 AG	34868-35038	GT	AGG
(GTG)	 AG	35353-35516	GT	AGG
(AAC)	 AG	35881-36022	GT	CTG
(AAA)	 AG	36382-36474	GC	CTG
-recovered pasa_asmbl_50182.p1, initial, 34055, 34091
-recovered pasa_asmbl_50182.p1, internal, 34239, 34395
-recovered pasa_asmbl_50182.p1, internal, 34565, 34688
-recovered pasa_asmbl_50182.p1, internal, 34868, 35038
-recovered pasa_asmbl_50182.p1, internal, 35353, 35516
-recovered pasa_asmbl_50182.p1, internal, 35881, 36022
-recovered pasa_asmbl_50182.p1, internal, 36382, 36474
Valid prediction for snap_scaffold_7-snap.2869-T1
Valid prediction for GeneMark_model.31903_t
Valid prediction for GeneMark_model.31918_t
Valid prediction for GeneMark_model.31884_t
Valid prediction for GlimmerHMM_glimmerT_19001-T1
Valid prediction for snap_scaffold_7-snap.2839-T1
Valid prediction for GeneMark_model.31890_t
Valid prediction for GeneMark_model.31932_t
Valid prediction for GeneMark_model.31928_t
Valid prediction for snap_scaffold_7-snap.2854-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_7-snap.2849-T1
Couldn't classify 90439, 91698
Sorry, prediction pasa_asmbl_50179.p1 fails validation.
(CCA)	 GC	90439-91698	GT	TGG
Valid prediction for snap_scaffold_7-snap.2837-T1
Valid prediction for GeneMark_model.31925_t
Valid prediction for GeneMark_model.31900_t
Valid prediction for GeneMark_model.31891_t
Valid prediction for Augustus_model.g12844.t1
Valid prediction for HiQ_model.g12848.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17896, rend_intergenic: 10454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25561, rend_intergenic: 24751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37429, rend_intergenic: 26916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39997, rend_intergenic: 37952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41332, rend_intergenic: 40134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52180, rend_intergenic: 43234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64876, rend_intergenic: 54326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73004, rend_intergenic: 70484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76395, rend_intergenic: 73575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80265, rend_intergenic: 76491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110913, rend_intergenic: 96519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131984, rend_intergenic: 130418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196055, rend_intergenic: 191268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205093, rend_intergenic: 200118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210533, rend_intergenic: 207607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 222259
-exon list size: 683


building trellis

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48.6    
48.8    
48.9    
49.1    
49.2    
49.3    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.7    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.7    
51.8    
52.0    
52.1    
52.3    
52.4    
52.6    
52.7    
52.8    
53.0    
53.1    
53.3    
53.4    
53.6    
53.7    
53.9    
54.0    
54.2    
54.3    
54.5    
54.6    
54.7    
54.9    
55.0    
55.2    
55.3    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.4    
56.5    
56.6    
56.8    
56.9    
57.1    
57.2    
57.4    
57.5    
57.7    
57.8    
58.0    
58.1    
58.2    
58.4    
58.5    
58.7    
58.8    
59.0    
59.1    
59.3    
59.4    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.6    
63.8    
63.9    
64.1    
64.2    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.3    
65.4    
65.5    
65.7    
65.8    
66.0    
66.1    
66.3    
66.4    
66.6    
66.7    
66.9    
67.0    
67.2    
67.3    
67.4    
67.6    
67.7    
67.9    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.3    
69.5    
69.6    
69.8    
69.9    
70.1    
70.2    
70.4    
70.5    
70.7    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.7    
71.8    
72.0    
72.1    
72.3    
72.4    
72.6    
72.7    
72.8    
73.0    
73.1    
73.3    
73.4    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.5    
74.6    
74.7    
74.9    
75.0    
75.2    
75.3    
75.5    
75.6    
75.8    
75.9    
76.1    
76.2    
76.4    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.2    
78.4    
78.5    
78.7    
78.8    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.6    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.6    
81.8    
81.9    
82.0    
82.2    
82.3    
82.5    
82.6    
82.8    
82.9    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.1    
84.2    
84.4    
84.5    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
86.0    
86.1    
86.3    
86.4    
86.6    
86.7    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.3    
89.5    
89.6    
89.8    
89.9    
90.1    
90.2    
90.4    
90.5    
90.7    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.1    
92.3    
92.4    
92.6    
92.7    
92.8    
93.0    
93.1    
93.3    
93.4    
93.6    
93.7    
93.9    
94.0    
94.2    
94.3    
94.5    
94.6    
94.7    
94.9    
95.0    
95.2    
95.3    
95.5    
95.6    
95.8    
95.9    
96.1    
96.2    
96.4    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
98.0    
98.1    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 17896, rend_intergenic: 10454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25561, rend_intergenic: 24751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37429, rend_intergenic: 26916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39997, rend_intergenic: 37952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41332, rend_intergenic: 40134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52180, rend_intergenic: 43234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64876, rend_intergenic: 54326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73004, rend_intergenic: 70484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76395, rend_intergenic: 73575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80265, rend_intergenic: 76491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110913, rend_intergenic: 96519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131984, rend_intergenic: 130418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196055, rend_intergenic: 191268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205093, rend_intergenic: 200118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210533, rend_intergenic: 207607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14197
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 209485 - 222259
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support