-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_14265601-14448597

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.2728-T1
Valid prediction for GeneMark_model.31723_t
Valid prediction for GlimmerHMM_glimmerT_18913-T1
Valid prediction for GeneMark_model.31724_t
Valid prediction for snap_scaffold_7-snap.2736-T1
Valid prediction for GeneMark_model.31714_t
Valid prediction for Augustus_model.g12791.t1
Valid prediction for snap_scaffold_7-snap.2712-T1
Valid prediction for snap_scaffold_7-snap.2697-T1
Valid prediction for snap_scaffold_7-snap.2733-T1
Valid prediction for GeneMark_model.31701_t
Valid prediction for GeneMark_model.31705_t
Valid prediction for GeneMark_model.31717_t
Valid prediction for GeneMark_model.31691_t
Valid prediction for GeneMark_model.31725_t
Valid prediction for snap_scaffold_7-snap.2722-T1
Valid prediction for GeneMark_model.31690_t
Valid prediction for GeneMark_model.31696_t
Valid prediction for snap_scaffold_7-snap.2698-T1
Valid prediction for Augustus_model.g12790.t1
Valid prediction for snap_scaffold_7-snap.2735-T1
Valid prediction for snap_scaffold_7-snap.2723-T1
Valid prediction for GeneMark_model.31732_t
Valid prediction for GlimmerHMM_glimmerT_18897-T1
Valid prediction for GeneMark_model.31694_t
Valid prediction for snap_scaffold_7-snap.2727-T1
Valid prediction for snap_scaffold_7-snap.2713-T1
Valid prediction for GeneMark_model.31740_t
Valid prediction for GeneMark_model.31733_t
Valid prediction for snap_scaffold_7-snap.2699-T1
Valid prediction for snap_scaffold_7-snap.2730-T1
Valid prediction for Augustus_model.g12786.t1
Valid prediction for snap_scaffold_7-snap.2706-T1
Valid prediction for Augustus_model.g12787.t1
Valid prediction for Augustus_model.g12793.t1
Valid prediction for GlimmerHMM_glimmerT_18911-T1
Valid prediction for GeneMark_model.31721_t
Valid prediction for GlimmerHMM_glimmerT_18920-T1
Valid prediction for GlimmerHMM_glimmerT_18921-T1
Valid prediction for snap_scaffold_7-snap.2714-T1
Valid prediction for Augustus_model.g12794.t1
Valid prediction for GeneMark_model.31703_t
Valid prediction for snap_scaffold_7-snap.2704-T1
Valid prediction for GeneMark_model.31688_t
Valid prediction for snap_scaffold_7-snap.2731-T1
Valid prediction for GeneMark_model.31737_t
Valid prediction for Augustus_model.g12785.t1
Valid prediction for snap_scaffold_7-snap.2695-T1
Valid prediction for GlimmerHMM_glimmerT_18919-T1
Valid prediction for GeneMark_model.31730_t
Valid prediction for GeneMark_model.31712_t
Valid prediction for GeneMark_model.31706_t
Valid prediction for Augustus_model.g12788.t1
Valid prediction for GlimmerHMM_glimmerT_18916-T1
Valid prediction for GeneMark_model.31710_t
Valid prediction for GeneMark_model.31697_t
Valid prediction for Augustus_model.g12783.t1
Valid prediction for snap_scaffold_7-snap.2707-T1
Valid prediction for snap_scaffold_7-snap.2734-T1
Valid prediction for GeneMark_model.31736_t
Valid prediction for GeneMark_model.31720_t
Valid prediction for GeneMark_model.31727_t
Valid prediction for snap_scaffold_7-snap.2732-T1
Valid prediction for snap_scaffold_7-snap.2719-T1
Valid prediction for GlimmerHMM_glimmerT_18904-T1
Valid prediction for Augustus_model.g12792.t1
Valid prediction for snap_scaffold_7-snap.2702-T1
Valid prediction for GlimmerHMM_glimmerT_18917-T1
Valid prediction for GlimmerHMM_glimmerT_18909-T1
Valid prediction for GeneMark_model.31699_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.31718_t
Valid prediction for GeneMark_model.31719_t
Valid prediction for GlimmerHMM_glimmerT_18918-T1
Valid prediction for GeneMark_model.31726_t
Valid prediction for GeneMark_model.31739_t
Valid prediction for snap_scaffold_7-snap.2701-T1
Valid prediction for snap_scaffold_7-snap.2705-T1
Valid prediction for GeneMark_model.31729_t
Valid prediction for Augustus_model.g12784.t1
Valid prediction for GlimmerHMM_glimmerT_18908-T1
Valid prediction for GeneMark_model.31693_t
Valid prediction for snap_scaffold_7-snap.2720-T1
Valid prediction for snap_scaffold_7-snap.2725-T1
Valid prediction for snap_scaffold_7-snap.2703-T1
Valid prediction for GeneMark_model.31704_t
Valid prediction for GeneMark_model.31722_t
Valid prediction for GeneMark_model.31702_t
Valid prediction for GeneMark_model.31715_t
Valid prediction for snap_scaffold_7-snap.2724-T1
Valid prediction for GeneMark_model.31689_t
Valid prediction for Augustus_model.g12789.t1
Valid prediction for GlimmerHMM_glimmerT_18903-T1
Valid prediction for GlimmerHMM_glimmerT_18915-T1
Valid prediction for GeneMark_model.31708_t
Valid prediction for GeneMark_model.31713_t
Valid prediction for GlimmerHMM_glimmerT_18914-T1
Valid prediction for snap_scaffold_7-snap.2715-T1
Valid prediction for snap_scaffold_7-snap.2726-T1
Valid prediction for snap_scaffold_7-snap.2711-T1
Valid prediction for GeneMark_model.31709_t
Valid prediction for GeneMark_model.31707_t
Valid prediction for GeneMark_model.31735_t
Valid prediction for GeneMark_model.31734_t
Valid prediction for snap_scaffold_7-snap.2700-T1
Valid prediction for snap_scaffold_7-snap.2718-T1
Valid prediction for snap_scaffold_7-snap.2696-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.31687_t
Valid prediction for GlimmerHMM_glimmerT_18898-T1
Valid prediction for GlimmerHMM_glimmerT_18899-T1
Valid prediction for GeneMark_model.31700_t
Valid prediction for snap_scaffold_7-snap.2729-T1
Valid prediction for GeneMark_model.31716_t
Valid prediction for snap_scaffold_7-snap.2708-T1
Valid prediction for snap_scaffold_7-snap.2709-T1
Valid prediction for GeneMark_model.31698_t
Valid prediction for GlimmerHMM_glimmerT_18912-T1
Valid prediction for GlimmerHMM_glimmerT_18902-T1
Valid prediction for GeneMark_model.31738_t
Valid prediction for GeneMark_model.31695_t
Valid prediction for snap_scaffold_7-snap.2710-T1
Valid prediction for GlimmerHMM_glimmerT_18906-T1
Valid prediction for snap_scaffold_7-snap.2717-T1
Valid prediction for GeneMark_model.31728_t
Valid prediction for snap_scaffold_7-snap.2716-T1
Valid prediction for GeneMark_model.31731_t
Valid prediction for snap_scaffold_7-snap.2721-T1
Valid prediction for GlimmerHMM_glimmerT_18900-T1
Valid prediction for GlimmerHMM_glimmerT_18901-T1
Valid prediction for GeneMark_model.31711_t
Valid prediction for GlimmerHMM_glimmerT_18907-T1
Valid prediction for GeneMark_model.31692_t
Valid prediction for GlimmerHMM_glimmerT_18910-T1
Valid prediction for GlimmerHMM_glimmerT_18905-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 51030, rend_intergenic: 51027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22507, rend_intergenic: 9803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40917, rend_intergenic: 36358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43758, rend_intergenic: 41852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50996, rend_intergenic: 50814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61586, rend_intergenic: 51011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74030, rend_intergenic: 62207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77221, rend_intergenic: 74910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92359, rend_intergenic: 84445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110857, rend_intergenic: 106905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125720, rend_intergenic: 124746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150524, rend_intergenic: 147314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155155, rend_intergenic: 152595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165730, rend_intergenic: 155953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182997
-exon list size: 671


building trellis

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99.7    
99.9    
-found 40 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 51030, rend_intergenic: 51027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22507, rend_intergenic: 9803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40917, rend_intergenic: 36358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43758, rend_intergenic: 41852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50996, rend_intergenic: 50814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61586, rend_intergenic: 51011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74030, rend_intergenic: 62207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77221, rend_intergenic: 74910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92359, rend_intergenic: 84445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110857, rend_intergenic: 106905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125720, rend_intergenic: 124746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150524, rend_intergenic: 147314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155155, rend_intergenic: 152595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165730, rend_intergenic: 155953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support