-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_14063178-14267997

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g12775.t1
Valid prediction for GeneMark_model.31646_t
Valid prediction for snap_scaffold_7-snap.2666-T1
Valid prediction for GlimmerHMM_glimmerT_18882-T1
Valid prediction for GeneMark_model.31634_t
Valid prediction for GeneMark_model.31679_t
Valid prediction for snap_scaffold_7-snap.2682-T1
Valid prediction for GeneMark_model.31677_t
Valid prediction for snap_scaffold_7-snap.2668-T1
Valid prediction for Augustus_model.g12779.t1
Valid prediction for Augustus_model.g12781.t1
Valid prediction for GlimmerHMM_glimmerT_18891-T1
Valid prediction for GeneMark_model.31629_t
Valid prediction for snap_scaffold_7-snap.2662-T1
Valid prediction for GeneMark_model.31630_t
Valid prediction for Augustus_model.g12783.t1
Valid prediction for GlimmerHMM_glimmerT_18896-T1
Valid prediction for snap_scaffold_7-snap.2660-T1
Valid prediction for GeneMark_model.31653_t
Valid prediction for GeneMark_model.31625_t
Valid prediction for snap_scaffold_7-snap.2694-T1
Valid prediction for snap_scaffold_7-snap.2684-T1
Valid prediction for GlimmerHMM_glimmerT_18897-T1
Valid prediction for GeneMark_model.31669_t
Valid prediction for snap_scaffold_7-snap.2673-T1
Valid prediction for GlimmerHMM_glimmerT_18875-T1
Valid prediction for GlimmerHMM_glimmerT_18892-T1
Valid prediction for snap_scaffold_7-snap.2685-T1
Valid prediction for snap_scaffold_7-snap.2678-T1
Valid prediction for snap_scaffold_7-snap.2691-T1
Valid prediction for GeneMark_model.31655_t
Valid prediction for GeneMark_model.31645_t
Valid prediction for snap_scaffold_7-snap.2680-T1
Valid prediction for GeneMark_model.31657_t
Valid prediction for GlimmerHMM_glimmerT_18878-T1
Valid prediction for GeneMark_model.31651_t
Valid prediction for snap_scaffold_7-snap.2677-T1
Valid prediction for GlimmerHMM_glimmerT_18890-T1
Valid prediction for GeneMark_model.31680_t
Valid prediction for GeneMark_model.31659_t
Valid prediction for GlimmerHMM_glimmerT_18885-T1
Valid prediction for GlimmerHMM_glimmerT_18880-T1
Valid prediction for GeneMark_model.31674_t
Valid prediction for GeneMark_model.31640_t
Valid prediction for snap_scaffold_7-snap.2658-T1
Valid prediction for GlimmerHMM_glimmerT_18886-T1
Valid prediction for GeneMark_model.31649_t
Valid prediction for snap_scaffold_7-snap.2670-T1
Valid prediction for snap_scaffold_7-snap.2687-T1
Valid prediction for snap_scaffold_7-snap.2689-T1
Valid prediction for snap_scaffold_7-snap.2690-T1
Valid prediction for GeneMark_model.31681_t
Valid prediction for GeneMark_model.31672_t
Valid prediction for GeneMark_model.31638_t
Valid prediction for snap_scaffold_7-snap.2693-T1
Valid prediction for GlimmerHMM_glimmerT_18894-T1
Valid prediction for GeneMark_model.31636_t
Valid prediction for GeneMark_model.31632_t
Valid prediction for Augustus_model.g12774.t1
Valid prediction for GeneMark_model.31663_t
Valid prediction for GeneMark_model.31642_t
Valid prediction for GeneMark_model.31626_t
Valid prediction for GlimmerHMM_glimmerT_18877-T1
Valid prediction for GeneMark_model.31666_t
Valid prediction for GeneMark_model.31661_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_7-snap.2692-T1
Valid prediction for snap_scaffold_7-snap.2661-T1
Valid prediction for Augustus_model.g12776.t1
Valid prediction for GlimmerHMM_glimmerT_18893-T1
Valid prediction for snap_scaffold_7-snap.2663-T1
Valid prediction for GeneMark_model.31668_t
Valid prediction for GeneMark_model.31664_t
Valid prediction for GlimmerHMM_glimmerT_18879-T1
Valid prediction for GeneMark_model.31631_t
Valid prediction for GeneMark_model.31654_t
Valid prediction for GlimmerHMM_glimmerT_18883-T1
Valid prediction for GeneMark_model.31627_t
Valid prediction for snap_scaffold_7-snap.2664-T1
Valid prediction for GeneMark_model.31652_t
Valid prediction for Augustus_model.g12778.t1
Valid prediction for pasa_asmbl_50153.p1
Valid prediction for snap_scaffold_7-snap.2659-T1
Valid prediction for GeneMark_model.31660_t
Valid prediction for GeneMark_model.31685_t
Valid prediction for snap_scaffold_7-snap.2665-T1
Valid prediction for snap_scaffold_7-snap.2667-T1
Valid prediction for GeneMark_model.31641_t
Valid prediction for snap_scaffold_7-snap.2688-T1
Valid prediction for GlimmerHMM_glimmerT_18895-T1
Valid prediction for GeneMark_model.31678_t
Valid prediction for GeneMark_model.31628_t
Valid prediction for Augustus_model.g12780.t1
Valid prediction for GeneMark_model.31675_t
Valid prediction for CodingQuarry_transcript_57567-T1
Valid prediction for GeneMark_model.31637_t
Valid prediction for GeneMark_model.31684_t
Valid prediction for snap_scaffold_7-snap.2672-T1
Valid prediction for GlimmerHMM_glimmerT_18876-T1
Valid prediction for Augustus_model.g12777.t1
Valid prediction for GeneMark_model.31676_t
Valid prediction for GeneMark_model.31647_t
Valid prediction for GeneMark_model.31682_t
Valid prediction for GlimmerHMM_glimmerT_18887-T1
Valid prediction for GeneMark_model.31658_t
Valid prediction for GeneMark_model.31673_t
Valid prediction for GeneMark_model.31683_t
Valid prediction for snap_scaffold_7-snap.2669-T1
Valid prediction for GlimmerHMM_glimmerT_18881-T1
Valid prediction for snap_scaffold_7-snap.2683-T1
Valid prediction for snap_scaffold_7-snap.2679-T1
Valid prediction for GeneMark_model.31639_t
Valid prediction for GlimmerHMM_glimmerT_18889-T1
Valid prediction for GlimmerHMM_glimmerT_18888-T1
Valid prediction for GeneMark_model.31635_t
Valid prediction for GeneMark_model.31624_t
Valid prediction for GeneMark_model.31670_t
Valid prediction for GeneMark_model.31633_t
Valid prediction for GeneMark_model.31656_t
Valid prediction for GeneMark_model.31648_t
Valid prediction for snap_scaffold_7-snap.2676-T1
Valid prediction for GeneMark_model.31667_t
Valid prediction for GlimmerHMM_glimmerT_18884-T1
Valid prediction for GlimmerHMM_glimmerT_18874-T1
Valid prediction for GeneMark_model.31650_t
Valid prediction for snap_scaffold_7-snap.2671-T1
Valid prediction for snap_scaffold_7-snap.2681-T1
Valid prediction for GeneMark_model.31644_t
Valid prediction for snap_scaffold_7-snap.2686-T1
Valid prediction for snap_scaffold_7-snap.2674-T1
Valid prediction for GeneMark_model.31665_t
Valid prediction for GeneMark_model.31643_t
Valid prediction for Augustus_model.g12782.t1
Valid prediction for snap_scaffold_7-snap.2675-T1
Valid prediction for GeneMark_model.31671_t
Valid prediction for GeneMark_model.31662_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11968, rend_intergenic: 8946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24555, rend_intergenic: 18206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38535, rend_intergenic: 30736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41040, rend_intergenic: 39274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51330, rend_intergenic: 42355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53960, rend_intergenic: 51683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55380, rend_intergenic: 54044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57683, rend_intergenic: 56060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63912, rend_intergenic: 57978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71670, rend_intergenic: 66761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97102, rend_intergenic: 82503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155986, rend_intergenic: 146462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170003, rend_intergenic: 156787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 204820
-exon list size: 722


building trellis

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-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 11968, rend_intergenic: 8946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24555, rend_intergenic: 18206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38535, rend_intergenic: 30736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41040, rend_intergenic: 39274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51330, rend_intergenic: 42355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53960, rend_intergenic: 51683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55380, rend_intergenic: 54044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57683, rend_intergenic: 56060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63912, rend_intergenic: 57978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71670, rend_intergenic: 66761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97102, rend_intergenic: 82503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155986, rend_intergenic: 146462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170003, rend_intergenic: 156787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support