-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_1310852-1523716 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.29100_t Valid prediction for GeneMark_model.29111_t Valid prediction for snap_scaffold_7-snap.339-T1 Valid prediction for GeneMark_model.29109_t Valid prediction for snap_scaffold_7-snap.336-T1 Valid prediction for HiQ_model.g11588.t1 Valid prediction for snap_scaffold_7-snap.359-T1 Valid prediction for snap_scaffold_7-snap.362-T1 Valid prediction for Augustus_model.g11584.t1 Valid prediction for snap_scaffold_7-snap.320-T1 Valid prediction for snap_scaffold_7-snap.355-T1 Valid prediction for Augustus_model.g11585.t1 Valid prediction for GeneMark_model.29090_t Valid prediction for GeneMark_model.29084_t Valid prediction for snap_scaffold_7-snap.354-T1 Valid prediction for snap_scaffold_7-snap.319-T1 Valid prediction for Augustus_model.g11587.t1 Valid prediction for snap_scaffold_7-snap.352-T1 Valid prediction for GeneMark_model.29102_t Valid prediction for GlimmerHMM_glimmerT_17287-T1 Valid prediction for GeneMark_model.29097_t Valid prediction for GeneMark_model.29075_t Valid prediction for snap_scaffold_7-snap.334-T1 Valid prediction for GlimmerHMM_glimmerT_17272-T1 Valid prediction for pasa_asmbl_50493.p1 Valid prediction for snap_scaffold_7-snap.356-T1 Valid prediction for GeneMark_model.29073_t Valid prediction for snap_scaffold_7-snap.314-T1 Valid prediction for snap_scaffold_7-snap.324-T1 Valid prediction for GeneMark_model.29099_t Valid prediction for snap_scaffold_7-snap.343-T1 Valid prediction for snap_scaffold_7-snap.347-T1 Valid prediction for snap_scaffold_7-snap.349-T1 Valid prediction for snap_scaffold_7-snap.338-T1 Valid prediction for snap_scaffold_7-snap.328-T1 Valid prediction for GeneMark_model.29104_t Valid prediction for snap_scaffold_7-snap.331-T1 Couldn't classify 202569, 202667 Sorry, prediction pasa_asmbl_50490.p1 fails validation. (ATG) CA 200358-200408 GT CAG (GAG) AG 200663-200746 GT TGG (ATC) AG 202053-202166 GT AGG (GAG) AG 202569-202667 CT GGC -recovered pasa_asmbl_50490.p1, initial, 200358, 200408 -recovered pasa_asmbl_50490.p1, internal, 200663, 200746 -recovered pasa_asmbl_50490.p1, internal, 202053, 202166 Valid prediction for GlimmerHMM_glimmerT_17288-T1 Valid prediction for pasa_asmbl_50495.p1 Valid prediction for GlimmerHMM_glimmerT_17270-T1 Valid prediction for snap_scaffold_7-snap.342-T1 Valid prediction for GeneMark_model.29079_t Valid prediction for snap_scaffold_7-snap.326-T1 Valid prediction for CodingQuarry_transcript_57285-T1 Valid prediction for GlimmerHMM_glimmerT_17283-T1 Valid prediction for GeneMark_model.29088_t Valid prediction for GeneMark_model.29094_t Valid prediction for GeneMark_model.29081_t Valid prediction for snap_scaffold_7-snap.341-T1 Valid prediction for CodingQuarry_transcript_57284-T1 Valid prediction for snap_scaffold_7-snap.337-T1 Valid prediction for GeneMark_model.29077_t Valid prediction for GeneMark_model.29098_t Valid prediction for snap_scaffold_7-snap.332-T1 Valid prediction for snap_scaffold_7-snap.346-T1 Valid prediction for GeneMark_model.29107_t Valid prediction for snap_scaffold_7-snap.363-T1 Valid prediction for GeneMark_model.29105_t Valid prediction for snap_scaffold_7-snap.330-T1 Valid prediction for GlimmerHMM_glimmerT_17285-T1 Valid prediction for snap_scaffold_7-snap.321-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 53093, 53137 Couldn't classify 69427, 69525 Sorry, prediction pasa_asmbl_49551.p1 fails validation. (GAG) CA 53093-53137 GT AGG (ATC) AG 55360-55526 GT AGG (ACC) AG 56521-56633 GT GGG (ATG) AG 56993-57099 GT ACG (GAT) AG 57397-57516 GT AGG (GCA) AG 58835-58930 GT AGG (GTG) AG 59074-59201 GT AGG (ACT) AG 61131-61224 GT CTG (GAT) AG 61419-61573 GT AGG (GGT) AG 61806-62238 GT AGG (GTG) AG 62367-62495 GT AGG (ATT) AG 62608-62685 GT TGG (AGC) AG 62784-62945 GT CTG (GAC) AG 63130-63234 GT AAG (GCA) AG 63350-63445 GT AGG (TTT) AG 63610-63735 GT TGG (GAT) AG 64248-64400 GT AGG (ATA) AG 64522-64676 GT AGG (GAT) AG 65066-65192 GT CGG (ATC) AG 65567-65750 GC AGG (AAG) AG 66519-66676 GT AGG (AAG) AG 67577-67755 GT AAG (GCT) AG 67971-68109 GT AGG (CAA) AG 68441-68634 GT AGG (GCT) AG 68725-68887 GT AGG (GTC) AG 68994-69077 GT AAG (GAT) AG 69220-69327 GT AGG (TTC) AG 69427-69525 GT AGG add_exon() Sorry, pasa_asmbl_49551.p1 56993-57099-initial-1 is invalid. -recovered pasa_asmbl_49551.p1, initial, 56993, 57099 -recovered pasa_asmbl_49551.p1, internal, 55360, 55526 -recovered pasa_asmbl_49551.p1, internal, 56521, 56633 -recovered pasa_asmbl_49551.p1, internal, 56993, 57099 -recovered pasa_asmbl_49551.p1, internal, 57397, 57516 -recovered pasa_asmbl_49551.p1, internal, 58835, 58930 -recovered pasa_asmbl_49551.p1, internal, 59074, 59201 -recovered pasa_asmbl_49551.p1, internal, 61131, 61224 -recovered pasa_asmbl_49551.p1, internal, 61419, 61573 -recovered pasa_asmbl_49551.p1, internal, 61806, 62238 -recovered pasa_asmbl_49551.p1, internal, 62367, 62495 -recovered pasa_asmbl_49551.p1, internal, 62608, 62685 -recovered pasa_asmbl_49551.p1, internal, 62784, 62945 -recovered pasa_asmbl_49551.p1, internal, 63130, 63234 -recovered pasa_asmbl_49551.p1, internal, 63350, 63445 -recovered pasa_asmbl_49551.p1, internal, 63610, 63735 -recovered pasa_asmbl_49551.p1, internal, 64248, 64400 -recovered pasa_asmbl_49551.p1, internal, 64522, 64676 -recovered pasa_asmbl_49551.p1, internal, 65066, 65192 -recovered pasa_asmbl_49551.p1, internal, 65567, 65750 -recovered pasa_asmbl_49551.p1, internal, 66519, 66676 -recovered pasa_asmbl_49551.p1, internal, 67577, 67755 -recovered pasa_asmbl_49551.p1, internal, 67971, 68109 -recovered pasa_asmbl_49551.p1, internal, 68441, 68634 -recovered pasa_asmbl_49551.p1, internal, 68725, 68887 -recovered pasa_asmbl_49551.p1, internal, 68994, 69077 -recovered pasa_asmbl_49551.p1, internal, 69220, 69327 -recovered pasa_asmbl_49551.p1, internal, 69427, 69525 Couldn't classify 82277, 82873 Couldn't classify 96658, 98126 Sorry, prediction pasa_asmbl_49539.p1 fails validation. (CAG) TC 82277-82873 GT AGG (CCC) AG 82963-83112 GT AGG (TCT) AG 83347-83562 GT AGG (GCT) AG 83674-83823 GT GGG (AAC) AG 83965-84198 GT AGG (GGC) AG 84957-85109 GT AGG (GCT) AG 85490-85723 GT AGG (GTG) AG 86094-86375 GT AGG (GCC) AG 86695-86883 GT AGG (GTA) AG 87198-87557 GT AGG (TGC) AG 87878-88054 GC AGG (GCT) AG 89856-89979 GT AGG (AGG) AG 90538-90746 GT CGG (GCT) AG 90972-91289 GT GGG (GAC) AG 91739-91902 GT AAG (AGA) AG 92047-92203 GT ACG (GGC) AG 92862-92994 GT AGG (AGC) AG 94200-94435 GT AGG (GCC) AG 94701-94830 GT AGG (ATG) AG 95498-95697 GT AGG (ATC) AG 95989-96487 GT AGG (GGA) AG 96658-98126 GT AGG add_exon() Sorry, pasa_asmbl_49539.p1 95498-95697-initial-1 is invalid. -recovered pasa_asmbl_49539.p1, initial, 95498, 95697 -recovered pasa_asmbl_49539.p1, terminal, 89856, 89979 add_exon() Sorry, pasa_asmbl_49539.p1 94701-94830-terminal-3 is invalid. -recovered pasa_asmbl_49539.p1, terminal, 94701, 94830 -recovered pasa_asmbl_49539.p1, internal, 82963, 83112 -recovered pasa_asmbl_49539.p1, internal, 83347, 83562 -recovered pasa_asmbl_49539.p1, internal, 83674, 83823 -recovered pasa_asmbl_49539.p1, internal, 83965, 84198 -recovered pasa_asmbl_49539.p1, internal, 84957, 85109 -recovered pasa_asmbl_49539.p1, internal, 85490, 85723 -recovered pasa_asmbl_49539.p1, internal, 86094, 86375 -recovered pasa_asmbl_49539.p1, internal, 86695, 86883 -recovered pasa_asmbl_49539.p1, internal, 87198, 87557 -recovered pasa_asmbl_49539.p1, internal, 87878, 88054 -recovered pasa_asmbl_49539.p1, internal, 89856, 89979 -recovered pasa_asmbl_49539.p1, internal, 90538, 90746 -recovered pasa_asmbl_49539.p1, internal, 90972, 91289 -recovered pasa_asmbl_49539.p1, internal, 91739, 91902 -recovered pasa_asmbl_49539.p1, internal, 92047, 92203 -recovered pasa_asmbl_49539.p1, internal, 92862, 92994 -recovered pasa_asmbl_49539.p1, internal, 94200, 94435 -recovered pasa_asmbl_49539.p1, internal, 94701, 94830 -recovered pasa_asmbl_49539.p1, internal, 95498, 95697 -recovered pasa_asmbl_49539.p1, internal, 95989, 96487 -recovered pasa_asmbl_49539.p1, internal, 96658, 98126 Couldn't classify 106318, 106482 Sorry, prediction pasa_asmbl_49531.p1 fails validation. (CAG) CT 106318-106482 GT AGG (ATC) AG 106730-106900 GT GAG (CTT) AG 107536-107702 GT AGG (GCT) AG 108102-108261 GT AGG (ACG) AG 108539-108865 GT TGG (GTG) AG 109083-109167 GT AGG (GTG) AG 109346-109587 GT AGG (GTG) AG 109794-110000 GT AGG (TTT) AG 111007-111126 GT AGG (GCC) AG 111281-111388 GT AGG (GCT) AG 111776-111994 GT GGG (CAA) AG 112383-112586 GT AGG (TTC) AG 113566-113797 GT AGG (CCG) AG 113928-114154 GT AGG (ACG) AG 114992-115114 GT AGG (GTG) AG 115363-115464 GT AGG (GGT) AG 115872-115973 GT AGG (GAG) AG 116441-116614 GT AGG (CAC) AG 116906-117061 GT ACG (GTC) AG 118292-118489 GT AGG (GCC) AG 119594-119722 GT TGG (GAG) AG 120880-121050 GT AGG (GTG) AG 122155-122310 GT AGG (GTG) AG 122873-123079 GT AGG (TTC) AG 123939-124058 GT AGG (GAG) AG 125116-125285 GT AGG (GCA) AG 125713-125872 GT AGG (GTC) AG 127261-127455 GT AGG (GCG) AG 127706-127834 GC AGG (GAC) AG 128415-128558 GT AGG (GTG) AG 128743-128931 GT AGG (AGC) AG 129766-129889 GT AAG (GAA) AG 130523-130686 GT AGG (CTG) AG 130968-131130 GT CAG (AAT) AG 131370-131524 GT AGG (GTG) AG 131652-131726 GT GGG (TTC) AG 131926-131943 GT AGG (TTC) AG 134344-134461 GT AGG (TGC) AG 134854-134964 GT TGG (CTA) AG 136063-136259 GT AGG (ACT) AG 136594-136707 GT AGG (AGC) AG 137556-137679 GT AGG (GCG) AG 137828-138084 TC AGT add_exon() Sorry, pasa_asmbl_49531.p1 137556-137679-terminal-3 is invalid. -recovered pasa_asmbl_49531.p1, terminal, 137556, 137679 -recovered pasa_asmbl_49531.p1, terminal, 137828, 138084 -recovered pasa_asmbl_49531.p1, internal, 106730, 106900 -recovered pasa_asmbl_49531.p1, internal, 107536, 107702 -recovered pasa_asmbl_49531.p1, internal, 108102, 108261 -recovered pasa_asmbl_49531.p1, internal, 108539, 108865 -recovered pasa_asmbl_49531.p1, internal, 109083, 109167 -recovered pasa_asmbl_49531.p1, internal, 109346, 109587 -recovered pasa_asmbl_49531.p1, internal, 109794, 110000 -recovered pasa_asmbl_49531.p1, internal, 111007, 111126 -recovered pasa_asmbl_49531.p1, internal, 111281, 111388 -recovered pasa_asmbl_49531.p1, internal, 111776, 111994 -recovered pasa_asmbl_49531.p1, internal, 112383, 112586 -recovered pasa_asmbl_49531.p1, internal, 113566, 113797 -recovered pasa_asmbl_49531.p1, internal, 113928, 114154 -recovered pasa_asmbl_49531.p1, internal, 114992, 115114 -recovered pasa_asmbl_49531.p1, internal, 115363, 115464 -recovered pasa_asmbl_49531.p1, internal, 115872, 115973 -recovered pasa_asmbl_49531.p1, internal, 116441, 116614 -recovered pasa_asmbl_49531.p1, internal, 116906, 117061 -recovered pasa_asmbl_49531.p1, internal, 118292, 118489 -recovered pasa_asmbl_49531.p1, internal, 119594, 119722 -recovered pasa_asmbl_49531.p1, internal, 120880, 121050 -recovered pasa_asmbl_49531.p1, internal, 122155, 122310 -recovered pasa_asmbl_49531.p1, internal, 122873, 123079 -recovered pasa_asmbl_49531.p1, internal, 123939, 124058 -recovered pasa_asmbl_49531.p1, internal, 125116, 125285 -recovered pasa_asmbl_49531.p1, internal, 125713, 125872 -recovered pasa_asmbl_49531.p1, internal, 127261, 127455 -recovered pasa_asmbl_49531.p1, internal, 127706, 127834 -recovered pasa_asmbl_49531.p1, internal, 128415, 128558 -recovered pasa_asmbl_49531.p1, internal, 128743, 128931 -recovered pasa_asmbl_49531.p1, internal, 129766, 129889 -recovered pasa_asmbl_49531.p1, internal, 130523, 130686 -recovered pasa_asmbl_49531.p1, internal, 130968, 131130 -recovered pasa_asmbl_49531.p1, internal, 131370, 131524 -recovered pasa_asmbl_49531.p1, internal, 131652, 131726 -recovered pasa_asmbl_49531.p1, internal, 131926, 131943 -recovered pasa_asmbl_49531.p1, internal, 134344, 134461 -recovered pasa_asmbl_49531.p1, internal, 134854, 134964 -recovered pasa_asmbl_49531.p1, internal, 136063, 136259 -recovered pasa_asmbl_49531.p1, internal, 136594, 136707 -recovered pasa_asmbl_49531.p1, internal, 137556, 137679 Valid prediction for HiQ_model.g11579.t1 Valid prediction for snap_scaffold_7-snap.312-T1 Valid prediction for GeneMark_model.29092_t Valid prediction for Augustus_model.g11581.t1 Valid prediction for GeneMark_model.29071_t Valid prediction for Augustus_model.g11577.t1 Valid prediction for GeneMark_model.29110_t Valid prediction for HiQ_model.g11578.t1 Valid prediction for snap_scaffold_7-snap.316-T1 Valid prediction for snap_scaffold_7-snap.313-T1 Valid prediction for snap_scaffold_7-snap.340-T1 Valid prediction for GeneMark_model.29074_t Valid prediction for GlimmerHMM_glimmerT_17273-T1 Valid prediction for snap_scaffold_7-snap.361-T1 Valid prediction for snap_scaffold_7-snap.317-T1 Valid prediction for snap_scaffold_7-snap.335-T1 Valid prediction for GlimmerHMM_glimmerT_17282-T1 Valid prediction for pasa_asmbl_49538.p1 Valid prediction for snap_scaffold_7-snap.353-T1 Valid prediction for GlimmerHMM_glimmerT_17277-T1 Valid prediction for GeneMark_model.29076_t Valid prediction for snap_scaffold_7-snap.348-T1 Couldn't classify 207729, 207803 Sorry, prediction pasa_asmbl_49525.p2 fails validation. (CTT) AG 207729-207803 GT AGG (GAC) AG 208044-208154 GT TGG (GTT) AG 208279-208428 CG GAC -recovered pasa_asmbl_49525.p2, terminal, 208279, 208428 -recovered pasa_asmbl_49525.p2, internal, 207729, 207803 -recovered pasa_asmbl_49525.p2, internal, 208044, 208154 Valid prediction for snap_scaffold_7-snap.323-T1 Valid prediction for Augustus_model.g11573.t1 Valid prediction for CodingQuarry_transcript_57282-T1 Valid prediction for GlimmerHMM_glimmerT_17269-T1 Valid prediction for snap_scaffold_7-snap.333-T1 Valid prediction for GeneMark_model.29101_t Valid prediction for GeneMark_model.29096_t Valid prediction for Augustus_model.g11583.t1 Valid prediction for GlimmerHMM_glimmerT_17284-T1 Valid prediction for GeneMark_model.29082_t Valid prediction for GeneMark_model.29091_t Valid prediction for Augustus_model.g11586.t1 Valid prediction for snap_scaffold_7-snap.360-T1 Valid prediction for snap_scaffold_7-snap.344-T1 Valid prediction for GeneMark_model.29103_t Valid prediction for snap_scaffold_7-snap.357-T1 Valid prediction for snap_scaffold_7-snap.358-T1 Valid prediction for snap_scaffold_7-snap.315-T1 Valid prediction for snap_scaffold_7-snap.325-T1 Valid prediction for Augustus_model.g11580.t1 Valid prediction for GeneMark_model.29080_t Valid prediction for GlimmerHMM_glimmerT_17279-T1 Valid prediction for snap_scaffold_7-snap.311-T1 Couldn't classify 189473, 189517 Sorry, prediction pasa_asmbl_49527.p1 fails validation. (GGC) AG 189473-189517 GT AGG (GGT) AG 189783-189836 GT CTG (GGC) AG 189914-189967 GT AAG (GGT) AG 190713-190766 GT AGG (GGT) AG 191018-191089 GT AGG (GGG) AG 191844-191879 GT AGG (GGA) AG 192641-192685 GT CAG (GGA) AG 193082-193114 GT AGG (AAA) AG 194337-194483 GT CTG (GGG) AG 194637-194691 GT ATG (CGG) AG 194902-195090 GT AGG (GAG) AG 195410-195487 GT AGG (GGC) AG 196002-196195 AG GAA -recovered pasa_asmbl_49527.p1, terminal, 196002, 196195 -recovered pasa_asmbl_49527.p1, internal, 189473, 189517 -recovered pasa_asmbl_49527.p1, internal, 189783, 189836 -recovered pasa_asmbl_49527.p1, internal, 189914, 189967 -recovered pasa_asmbl_49527.p1, internal, 190713, 190766 -recovered pasa_asmbl_49527.p1, internal, 191018, 191089 -recovered pasa_asmbl_49527.p1, internal, 191844, 191879 -recovered pasa_asmbl_49527.p1, internal, 192641, 192685 -recovered pasa_asmbl_49527.p1, internal, 193082, 193114 -recovered pasa_asmbl_49527.p1, internal, 194337, 194483 -recovered pasa_asmbl_49527.p1, internal, 194637, 194691 -recovered pasa_asmbl_49527.p1, internal, 194902, 195090 -recovered pasa_asmbl_49527.p1, internal, 195410, 195487 Valid prediction for snap_scaffold_7-snap.310-T1 Couldn't classify 195410, 195484 Couldn't classify 196000, 196151 Sorry, prediction CodingQuarry_transcript_57281-T1 fails validation. (ATG) GA 191066-191089 GT AGG (GGG) AG 191844-191879 GT AGG (GGA) AG 192641-192685 GT CAG (GGA) AG 193082-193114 GT AGG (AAA) AG 194337-194483 GT CTG (GGG) AG 194637-194691 GT ATG (CGG) AG 194902-195090 GT AGG (GAG) AG 195410-195484 CA CCC (AGG) CC 196000-196151 TG GAT -recovered CodingQuarry_transcript_57281-T1, initial, 191066, 191089 -recovered CodingQuarry_transcript_57281-T1, internal, 191844, 191879 -recovered CodingQuarry_transcript_57281-T1, internal, 192641, 192685 -recovered CodingQuarry_transcript_57281-T1, internal, 193082, 193114 -recovered CodingQuarry_transcript_57281-T1, internal, 194337, 194483 -recovered CodingQuarry_transcript_57281-T1, internal, 194637, 194691 -recovered CodingQuarry_transcript_57281-T1, internal, 194902, 195090 Valid prediction for GeneMark_model.29106_t Valid prediction for GeneMark_model.29093_t Valid prediction for HiQ_model.g11574.t1 Valid prediction for GlimmerHMM_glimmerT_17271-T1 Valid prediction for snap_scaffold_7-snap.322-T1 Valid prediction for GlimmerHMM_glimmerT_17274-T1 Valid prediction for snap_scaffold_7-snap.327-T1 Couldn't classify 172493, 172913 Sorry, prediction pasa_asmbl_49530.p1 fails validation. (GGG) TG 172493-172913 GT AGG (AGA) AG 173079-173244 GT AGG (GTC) AG 173732-173960 GT AGG (AAG) AG 174799-174972 GT CGG (TTT) AG 175562-175708 AC AGA -recovered pasa_asmbl_49530.p1, terminal, 175562, 175708 -recovered pasa_asmbl_49530.p1, internal, 173079, 173244 -recovered pasa_asmbl_49530.p1, internal, 173732, 173960 -recovered pasa_asmbl_49530.p1, internal, 174799, 174972 Valid prediction for GeneMark_model.29085_t Valid prediction for GeneMark_model.29108_t Valid prediction for snap_scaffold_7-snap.351-T1 Valid prediction for GeneMark_model.29095_t Valid prediction for GeneMark_model.29072_t Valid prediction for GlimmerHMM_glimmerT_17278-T1 Valid prediction for GeneMark_model.29086_t Valid prediction for Augustus_model.g11576.t1 Valid prediction for snap_scaffold_7-snap.309-T1 Valid prediction for GlimmerHMM_glimmerT_17268-T1 Valid prediction for snap_scaffold_7-snap.329-T1 Valid prediction for GlimmerHMM_glimmerT_17280-T1 Valid prediction for snap_scaffold_7-snap.350-T1 Valid prediction for Augustus_model.g11575.t1 Couldn't classify 78011, 82180 Sorry, prediction pasa_asmbl_49542.p1 fails validation. (ATG) AG 72729-73322 GT AGG (CGA) AG 76099-76227 GT AGG (ACG) AG 77035-77123 GT AAG (GAT) AG 77267-77375 GT AGG (GAT) AG 78011-82180 GG CAG -recovered pasa_asmbl_49542.p1, initial, 72729, 73322 -recovered pasa_asmbl_49542.p1, internal, 72729, 73322 -recovered pasa_asmbl_49542.p1, internal, 76099, 76227 -recovered pasa_asmbl_49542.p1, internal, 77035, 77123 -recovered pasa_asmbl_49542.p1, internal, 77267, 77375 Valid prediction for snap_scaffold_7-snap.345-T1 Valid prediction for GeneMark_model.29089_t Valid prediction for GeneMark_model.29083_t Valid prediction for snap_scaffold_7-snap.318-T1 Valid prediction for GlimmerHMM_glimmerT_17286-T1 Valid prediction for GlimmerHMM_glimmerT_17275-T1 Valid prediction for CodingQuarry_transcript_57280-T1 Valid prediction for Augustus_model.g11582.t1 Couldn't classify 178702, 178774 Couldn't classify 186367, 186421 Sorry, prediction pasa_asmbl_49529.p1 fails validation. (CCC) AC 178702-178774 GT AGG (GGG) AG 180245-180299 GT CGG (GGT) AG 183109-183162 GT AGG (GGC) AG 183397-183450 GT CGG (GGT) AG 183733-183786 GT AGG (GGT) AG 185206-185259 GT CGG (GGG) AG 185453-185506 GT CAG (GGT) AG 185699-185752 GT AGG (GGT) AG 186367-186421 TG GGT -recovered pasa_asmbl_49529.p1, internal, 180245, 180299 -recovered pasa_asmbl_49529.p1, internal, 183109, 183162 -recovered pasa_asmbl_49529.p1, internal, 183397, 183450 -recovered pasa_asmbl_49529.p1, internal, 183733, 183786 -recovered pasa_asmbl_49529.p1, internal, 185206, 185259 -recovered pasa_asmbl_49529.p1, internal, 185453, 185506 -recovered pasa_asmbl_49529.p1, internal, 185699, 185752 Valid prediction for GeneMark_model.29078_t Valid prediction for GlimmerHMM_glimmerT_17281-T1 Valid prediction for GlimmerHMM_glimmerT_17276-T1 Valid prediction for GeneMark_model.29087_t Couldn't classify 71871, 72413 Sorry, prediction pasa_asmbl_49550.p1 fails validation. (ATA) AA 71871-72413 GA ACG -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20200, rend_intergenic: 16740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46091, rend_intergenic: 38434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48657, rend_intergenic: 47059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53806, rend_intergenic: 51468 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67190, rend_intergenic: 59825 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84890, rend_intergenic: 74798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89637, rend_intergenic: 85002 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92074, rend_intergenic: 89708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93311, rend_intergenic: 92556 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108703, rend_intergenic: 93826 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135825, rend_intergenic: 113010 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152201, rend_intergenic: 145123 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157527, rend_intergenic: 152268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162065, rend_intergenic: 160582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 164899, rend_intergenic: 163529 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176304, rend_intergenic: 165446 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183563, rend_intergenic: 177896 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189398, rend_intergenic: 185652 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 212865 -exon list size: 934 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 26 predictions from path traversal Error with prediction: snap lend_intergenic: 20200, rend_intergenic: 16740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46091, rend_intergenic: 38434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48657, rend_intergenic: 47059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53806, rend_intergenic: 51468 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67190, rend_intergenic: 59825 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84890, rend_intergenic: 74798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89637, rend_intergenic: 85002 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92074, rend_intergenic: 89708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93311, rend_intergenic: 92556 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108703, rend_intergenic: 93826 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135825, rend_intergenic: 113010 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152201, rend_intergenic: 145123 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157527, rend_intergenic: 152268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162065, rend_intergenic: 160582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 164899, rend_intergenic: 163529 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176304, rend_intergenic: 165446 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183563, rend_intergenic: 177896 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189398, rend_intergenic: 185652 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 15 predictions persist after filtering for low support