-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_7/scaffold_7_11179251-11356311

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_7-snap.2166-T1
Valid prediction for GeneMark_model.31090_t
Valid prediction for GeneMark_model.31102_t
Valid prediction for snap_scaffold_7-snap.2165-T1
Valid prediction for snap_scaffold_7-snap.2143-T1
Valid prediction for snap_scaffold_7-snap.2149-T1
Valid prediction for GeneMark_model.31096_t
Valid prediction for GeneMark_model.31108_t
Valid prediction for GlimmerHMM_glimmerT_18544-T1
Valid prediction for GlimmerHMM_glimmerT_18548-T1
Valid prediction for GlimmerHMM_glimmerT_18534-T1
Valid prediction for GeneMark_model.31080_t
Valid prediction for HiQ_model.g12515.t1
Valid prediction for CodingQuarry_transcript_57483-T1
Valid prediction for pasa_asmbl_51040.p1
Valid prediction for GeneMark_model.31078_t
Valid prediction for snap_scaffold_7-snap.2145-T1
Valid prediction for snap_scaffold_7-snap.2173-T1
Valid prediction for snap_scaffold_7-snap.2167-T1
Valid prediction for snap_scaffold_7-snap.2147-T1
Valid prediction for Augustus_model.g12508.t1
Valid prediction for Augustus_model.g12502.t1
Valid prediction for GeneMark_model.31084_t
Valid prediction for GlimmerHMM_glimmerT_18527-T1
Valid prediction for GlimmerHMM_glimmerT_18532-T1
Valid prediction for snap_scaffold_7-snap.2160-T1
Valid prediction for snap_scaffold_7-snap.2163-T1
Valid prediction for GlimmerHMM_glimmerT_18550-T1
Valid prediction for GeneMark_model.31095_t
Valid prediction for GlimmerHMM_glimmerT_18529-T1
Valid prediction for GeneMark_model.31082_t
Valid prediction for GlimmerHMM_glimmerT_18551-T1
Valid prediction for snap_scaffold_7-snap.2159-T1
Valid prediction for CodingQuarry_transcript_57482-T1
Valid prediction for Augustus_model.g12507.t1
Valid prediction for GeneMark_model.31098_t
Valid prediction for snap_scaffold_7-snap.2154-T1
Valid prediction for GlimmerHMM_glimmerT_18540-T1
Valid prediction for Augustus_model.g12505.t1
Valid prediction for Augustus_model.g12514.t1
Valid prediction for snap_scaffold_7-snap.2164-T1
Valid prediction for Augustus_model.g12518.t1
Valid prediction for GlimmerHMM_glimmerT_18538-T1
Valid prediction for Augustus_model.g12499.t1
Valid prediction for GeneMark_model.31100_t
Valid prediction for GlimmerHMM_glimmerT_18545-T1
Valid prediction for GeneMark_model.31086_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_18536-T1
Valid prediction for GlimmerHMM_glimmerT_18542-T1
Valid prediction for GeneMark_model.31104_t
Valid prediction for Augustus_model.g12513.t1
Valid prediction for Augustus_model.g12503.t1
Valid prediction for Augustus_model.g12500.t1
Valid prediction for pasa_asmbl_49964.p1
Valid prediction for GeneMark_model.31093_t
Valid prediction for snap_scaffold_7-snap.2148-T1
Valid prediction for GlimmerHMM_glimmerT_18541-T1
Valid prediction for GeneMark_model.31110_t
Valid prediction for snap_scaffold_7-snap.2155-T1
Valid prediction for snap_scaffold_7-snap.2153-T1
Valid prediction for Augustus_model.g12512.t1
Valid prediction for GeneMark_model.31087_t
Valid prediction for snap_scaffold_7-snap.2144-T1
Valid prediction for GeneMark_model.31092_t
Valid prediction for snap_scaffold_7-snap.2157-T1
Valid prediction for GeneMark_model.31077_t
Valid prediction for Augustus_model.g12504.t1
Valid prediction for GeneMark_model.31079_t
Valid prediction for GeneMark_model.31109_t
Valid prediction for GlimmerHMM_glimmerT_18528-T1
Valid prediction for GeneMark_model.31107_t
Valid prediction for snap_scaffold_7-snap.2171-T1
Valid prediction for snap_scaffold_7-snap.2161-T1
Valid prediction for snap_scaffold_7-snap.2146-T1
Valid prediction for Augustus_model.g12511.t1
Valid prediction for GlimmerHMM_glimmerT_18531-T1
Valid prediction for GlimmerHMM_glimmerT_18539-T1
Valid prediction for GeneMark_model.31081_t
Valid prediction for GeneMark_model.31101_t
Valid prediction for GeneMark_model.31094_t
Valid prediction for GlimmerHMM_glimmerT_18543-T1
Valid prediction for GeneMark_model.31106_t
Valid prediction for GlimmerHMM_glimmerT_18533-T1
Valid prediction for GlimmerHMM_glimmerT_18537-T1
Valid prediction for GeneMark_model.31088_t
Valid prediction for Augustus_model.g12516.t1
Valid prediction for GeneMark_model.31097_t
Valid prediction for snap_scaffold_7-snap.2172-T1
Valid prediction for snap_scaffold_7-snap.2156-T1
Valid prediction for Augustus_model.g12510.t1
Valid prediction for CodingQuarry_transcript_57481-T1
Valid prediction for snap_scaffold_7-snap.2151-T1
Valid prediction for GlimmerHMM_glimmerT_18546-T1
Valid prediction for Augustus_model.g12501.t1
Valid prediction for Augustus_model.g12517.t1
Valid prediction for snap_scaffold_7-snap.2169-T1
Valid prediction for snap_scaffold_7-snap.2170-T1
Valid prediction for snap_scaffold_7-snap.2150-T1
Valid prediction for snap_scaffold_7-snap.2158-T1
Valid prediction for GlimmerHMM_glimmerT_18530-T1
Valid prediction for GeneMark_model.31105_t
Valid prediction for GeneMark_model.31085_t
Valid prediction for GlimmerHMM_glimmerT_18549-T1
Valid prediction for GlimmerHMM_glimmerT_18535-T1
Valid prediction for GeneMark_model.31091_t
Valid prediction for GeneMark_model.31089_t
Valid prediction for GeneMark_model.31103_t
Valid prediction for GlimmerHMM_glimmerT_18547-T1
Valid prediction for Augustus_model.g12509.t1
Valid prediction for snap_scaffold_7-snap.2162-T1
Valid prediction for snap_scaffold_7-snap.2152-T1
Valid prediction for snap_scaffold_7-snap.2168-T1
Valid prediction for Augustus_model.g12506.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25739, rend_intergenic: 24339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28429, rend_intergenic: 25781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66921, rend_intergenic: 62956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80783, rend_intergenic: 76724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155363, rend_intergenic: 142185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166137, rend_intergenic: 164885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 177061
-exon list size: 393


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.5    
1.8    
2.0    
2.3    
2.5    
2.8    
3.0    
3.3    
3.5    
3.8    
4.1    
4.3    
4.6    
4.8    
5.1    
5.3    
5.6    
5.8    
6.1    
6.3    
6.6    
6.8    
7.1    
7.3    
7.6    
7.8    
8.1    
8.4    
8.6    
8.9    
9.1    
9.4    
9.6    
9.9    
10.1    
10.4    
10.6    
10.9    
11.1    
11.4    
11.6    
11.9    
12.2    
12.4    
12.7    
12.9    
13.2    
13.4    
13.7    
13.9    
14.2    
14.4    
14.7    
14.9    
15.2    
15.4    
15.7    
15.9    
16.2    
16.5    
16.7    
17.0    
17.2    
17.5    
17.7    
18.0    
18.2    
18.5    
18.7    
19.0    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.0    
21.3    
21.5    
21.8    
22.0    
22.3    
22.5    
22.8    
23.0    
23.3    
23.5    
23.8    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.6    
25.8    
26.1    
26.3    
26.6    
26.8    
27.1    
27.3    
27.6    
27.8    
28.1    
28.4    
28.6    
28.9    
29.1    
29.4    
29.6    
29.9    
30.1    
30.4    
30.6    
30.9    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.4    
34.7    
34.9    
35.2    
35.4    
35.7    
35.9    
36.2    
36.5    
36.7    
37.0    
37.2    
37.5    
37.7    
38.0    
38.2    
38.5    
38.7    
39.0    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.0    
41.3    
41.5    
41.8    
42.0    
42.3    
42.5    
42.8    
43.0    
43.3    
43.5    
43.8    
44.1    
44.3    
44.6    
44.8    
45.1    
45.3    
45.6    
45.8    
46.1    
46.3    
46.6    
46.8    
47.1    
47.3    
47.6    
47.8    
48.1    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.4    
51.6    
51.9    
52.2    
52.4    
52.7    
52.9    
53.2    
53.4    
53.7    
53.9    
54.2    
54.4    
54.7    
54.9    
55.2    
55.4    
55.7    
55.9    
56.2    
56.5    
56.7    
57.0    
57.2    
57.5    
57.7    
58.0    
58.2    
58.5    
58.7    
59.0    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.0    
61.3    
61.5    
61.8    
62.0    
62.3    
62.5    
62.8    
63.0    
63.3    
63.5    
63.8    
64.1    
64.3    
64.6    
64.8    
65.1    
65.3    
65.6    
65.8    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.1    
69.4    
69.6    
69.9    
70.1    
70.4    
70.6    
70.9    
71.1    
71.4    
71.6    
71.9    
72.2    
72.4    
72.7    
72.9    
73.2    
73.4    
73.7    
73.9    
74.2    
74.4    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.2    
76.5    
76.7    
77.0    
77.2    
77.5    
77.7    
78.0    
78.2    
78.5    
78.7    
79.0    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.0    
81.3    
81.5    
81.8    
82.0    
82.3    
82.5    
82.8    
83.0    
83.3    
83.5    
83.8    
84.1    
84.3    
84.6    
84.8    
85.1    
85.3    
85.6    
85.8    
86.1    
86.3    
86.6    
86.8    
87.1    
87.3    
87.6    
87.8    
88.1    
88.4    
88.6    
88.9    
89.1    
89.4    
89.6    
89.9    
90.1    
90.4    
90.6    
90.9    
91.1    
91.4    
91.6    
91.9    
92.2    
92.4    
92.7    
92.9    
93.2    
93.4    
93.7    
93.9    
94.2    
94.4    
94.7    
94.9    
95.2    
95.4    
95.7    
95.9    
96.2    
96.5    
96.7    
97.0    
97.2    
97.5    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 25739, rend_intergenic: 24339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28429, rend_intergenic: 25781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66921, rend_intergenic: 62956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80783, rend_intergenic: 76724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155363, rend_intergenic: 142185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166137, rend_intergenic: 164885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support