-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_698

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62133-T1
Couldn't classify 93, 170
Sorry, prediction GeneMark_model.108219_t fails validation.
(GGG)	 AG	93-170	GT	AGG
(TAT)	 AG	268-441	GC	AAG
-recovered GeneMark_model.108219_t, terminal, 268, 441
-recovered GeneMark_model.108219_t, internal, 93, 170
-recovered GeneMark_model.108219_t, internal, 268, 441
Couldn't classify 4455, 4634
Sorry, prediction snap_scaffold_698-snap.2-T1 fails validation.
(ATG)	 AA	4070-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered snap_scaffold_698-snap.2-T1, initial, 4070, 4231
-recovered snap_scaffold_698-snap.2-T1, internal, 4455, 4634
Couldn't classify 4455, 4634
Sorry, prediction Augustus_model.g41301.t1 fails validation.
(ATG)	 AA	4070-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered Augustus_model.g41301.t1, initial, 4070, 4231
-recovered Augustus_model.g41301.t1, internal, 4455, 4634
Couldn't classify 4455, 4634
Sorry, prediction GlimmerHMM_glimmerT_62134-T1 fails validation.
(ATG)	 CC	4103-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered GlimmerHMM_glimmerT_62134-T1, initial, 4103, 4231
-recovered GlimmerHMM_glimmerT_62134-T1, internal, 4455, 4634
Couldn't classify 73, 143
Sorry, prediction Augustus_model.g41300.t1 fails validation.
(TAC)	 AG	73-143	GT	GAG
(TAT)	 AG	268-437	GT	GGG
(ACT)	 AG	779-932	GT	CGG
(GAA)	 AG	1318-1926	CC	AGC
-recovered Augustus_model.g41300.t1, terminal, 1318, 1926
-recovered Augustus_model.g41300.t1, internal, 73, 143
-recovered Augustus_model.g41300.t1, internal, 268, 437
-recovered Augustus_model.g41300.t1, internal, 779, 932
Couldn't classify 93, 143
Sorry, prediction snap_scaffold_698-snap.1-T1 fails validation.
(GGG)	 AG	93-143	GT	GAG
(TAT)	 AG	268-437	GT	GGG
(ACT)	 AG	779-932	GT	CGG
(GAA)	 AG	1318-1926	CC	AGC
-recovered snap_scaffold_698-snap.1-T1, terminal, 1318, 1926
-recovered snap_scaffold_698-snap.1-T1, internal, 93, 143
-recovered snap_scaffold_698-snap.1-T1, internal, 268, 437
-recovered snap_scaffold_698-snap.1-T1, internal, 779, 932
Valid prediction for GlimmerHMM_glimmerT_62132-T1
Couldn't classify 4455, 4634
Sorry, prediction GeneMark_model.108221_t fails validation.
(ATG)	 CC	4103-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered GeneMark_model.108221_t, initial, 4103, 4231
-recovered GeneMark_model.108221_t, internal, 4455, 4634
Couldn't classify 4455, 4634
Sorry, prediction pasa_asmbl_49467.p1 fails validation.
(ATG)	 CC	4103-4231	GT	AGG
(ACG)	 AG	4455-4634	GT	GGG
-recovered pasa_asmbl_49467.p1, initial, 4103, 4231
-recovered pasa_asmbl_49467.p1, internal, 4455, 4634
Couldn't classify 1408, 1851
Sorry, prediction pasa_asmbl_49465.p1 fails validation.
(GAA)	 AG	1408-1851	GG	AGG

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108220_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4938
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support