-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_694

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4661, 4734
Sorry, prediction snap_scaffold_694-snap.1-T1 fails validation.
(ATG)	 AG	2067-2070	GT	GGG
(CTT)	 AG	2138-2458	GT	TAG
(CTT)	 AG	4661-4734	GT	CGG
-recovered snap_scaffold_694-snap.1-T1, initial, 2067, 2070
-recovered snap_scaffold_694-snap.1-T1, internal, 2067, 2070
-recovered snap_scaffold_694-snap.1-T1, internal, 2138, 2458
-recovered snap_scaffold_694-snap.1-T1, internal, 4661, 4734
Couldn't classify 195, 251
Sorry, prediction GeneMark_model.108215_t fails validation.
(AGA)	 AG	195-251	GT	GGG
(AGG)	 AG	1075-1185	GT	GGG
(GAG)	 AG	1210-1290	GT	AGG
(GAG)	 AG	1323-1358	GT	GCG
(GAA)	 AG	1393-1404	GT	AGG
(GCA)	 AG	1428-1463	GT	GGG
(AGA)	 AG	1680-1811	GT	GGG
(GCT)	 AG	1961-1993	GC	GAG
(GGG)	 AG	2041-2103	GT	AAG
(GGC)	 AG	2150-2459	TG	AGT
-recovered GeneMark_model.108215_t, terminal, 2150, 2459
-recovered GeneMark_model.108215_t, internal, 195, 251
-recovered GeneMark_model.108215_t, internal, 1075, 1185
-recovered GeneMark_model.108215_t, internal, 1210, 1290
-recovered GeneMark_model.108215_t, internal, 1323, 1358
-recovered GeneMark_model.108215_t, internal, 1393, 1404
-recovered GeneMark_model.108215_t, internal, 1428, 1463
-recovered GeneMark_model.108215_t, internal, 1680, 1811
-recovered GeneMark_model.108215_t, internal, 1961, 1993
-recovered GeneMark_model.108215_t, internal, 2041, 2103

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4960
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support