-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_693

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_693-snap.2-T1
Couldn't classify 111, 208
Sorry, prediction GeneMark_model.108212_t fails validation.
(ACG)	 AG	111-208	GT	AGG
(CAT)	 AG	363-474	GT	AGG
(CCC)	 AG	576-676	CC	AGC
-recovered GeneMark_model.108212_t, terminal, 576, 676
-recovered GeneMark_model.108212_t, internal, 111, 208
-recovered GeneMark_model.108212_t, internal, 363, 474
Couldn't classify 134, 208
Couldn't classify 1713, 1879
Sorry, prediction pasa_asmbl_49462.p1 fails validation.
(TGT)	 CC	134-208	GT	AGG
(CAT)	 AG	363-474	GT	AGG
(TTC)	 AG	1151-1264	GT	ATG
(CCC)	 AG	1713-1879	CC	GGC
-recovered pasa_asmbl_49462.p1, internal, 363, 474
-recovered pasa_asmbl_49462.p1, internal, 1151, 1264
Couldn't classify 3586, 3729
Couldn't classify 4390, 4436
Sorry, prediction pasa_asmbl_49463.p2 fails validation.
(GTG)	 AG	3586-3729	GT	CGG
(CAG)	 AG	3949-4078	GT	AGG
(GTG)	 AG	4390-4436	AG	ACA
-recovered pasa_asmbl_49463.p2, internal, 3586, 3729
-recovered pasa_asmbl_49463.p2, internal, 3949, 4078
Couldn't classify 4390, 4437
Sorry, prediction GlimmerHMM_glimmerT_62128-T1 fails validation.
(ATG)	 TC	71-208	GT	AGG
(CAT)	 AG	363-474	GT	AGG
(TTC)	 AG	1151-1264	GT	ATG
(CCC)	 AG	1713-1918	GT	AGG
(GTG)	 AG	3586-3729	GT	CGG
(CAG)	 AG	3949-4078	GT	AGG
(GTG)	 AG	4390-4437	GT	CAG
-recovered GlimmerHMM_glimmerT_62128-T1, initial, 71, 208
-recovered GlimmerHMM_glimmerT_62128-T1, internal, 363, 474
-recovered GlimmerHMM_glimmerT_62128-T1, internal, 1151, 1264
-recovered GlimmerHMM_glimmerT_62128-T1, internal, 1713, 1918
-recovered GlimmerHMM_glimmerT_62128-T1, internal, 3586, 3729
-recovered GlimmerHMM_glimmerT_62128-T1, internal, 3949, 4078
-recovered GlimmerHMM_glimmerT_62128-T1, internal, 4390, 4437
Couldn't classify 3863, 4078
Sorry, prediction GeneMark_model.108214_t fails validation.
(ATG)	 CC	1838-1918	GT	AGG
(GTG)	 AG	3586-3729	GT	CGG
(TCC)	 AG	3863-4078	GT	AGG
-recovered GeneMark_model.108214_t, initial, 1838, 1918
-recovered GeneMark_model.108214_t, internal, 3586, 3729
-recovered GeneMark_model.108214_t, internal, 3863, 4078
Couldn't classify 111, 208
Couldn't classify 4390, 4437
Sorry, prediction Augustus_model.g41299.t1 fails validation.
(ACG)	 AG	111-208	GT	AGG
(CAT)	 AG	363-474	GT	AGG
(TTC)	 AG	1151-1264	GT	ATG
(CCC)	 AG	1713-1918	GT	AGG
(GTG)	 AG	3586-3729	GT	CGG
(CAG)	 AG	3949-4078	GT	AGG
(GTG)	 AG	4390-4437	GT	CAG
-recovered Augustus_model.g41299.t1, internal, 111, 208
-recovered Augustus_model.g41299.t1, internal, 363, 474
-recovered Augustus_model.g41299.t1, internal, 1151, 1264
-recovered Augustus_model.g41299.t1, internal, 1713, 1918
-recovered Augustus_model.g41299.t1, internal, 3586, 3729
-recovered Augustus_model.g41299.t1, internal, 3949, 4078
-recovered Augustus_model.g41299.t1, internal, 4390, 4437

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_693-snap.1-T1
Valid prediction for GeneMark_model.108213_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4479, rend_intergenic: 1186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4961
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4479, rend_intergenic: 1186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support