-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_692

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 304, 351
Sorry, prediction GeneMark_model.108211_t fails validation.
(AGG)	 AG	304-351	GT	AGG
(GTC)	 AG	376-399	GT	AGG
(GAT)	 AG	421-456	GT	GAG
(AGA)	 AG	480-533	GT	AGG
(GAG)	 AG	557-611	TC	GAT
-recovered GeneMark_model.108211_t, terminal, 557, 611
-recovered GeneMark_model.108211_t, internal, 304, 351
-recovered GeneMark_model.108211_t, internal, 376, 399
-recovered GeneMark_model.108211_t, internal, 421, 456
-recovered GeneMark_model.108211_t, internal, 480, 533
Valid prediction for GlimmerHMM_glimmerT_62127-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62127-T1 272-542-terminal-1 is invalid.
Valid prediction for snap_scaffold_692-snap.1-T1
add_exon() Sorry, snap_scaffold_692-snap.1-T1 272-542-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4970
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support