-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_691

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4496, 4552
Sorry, prediction GeneMark_model.108210_t fails validation.
(ATG)	 GC	1102-1121	GT	GGG
(GCG)	 AG	1206-1262	GT	GGG
(GGG)	 AG	1288-1476	GT	GAG
(GCC)	 AG	4462-4467	GT	GGG
(AAG)	 AG	4496-4552	GT	CAG
-recovered GeneMark_model.108210_t, initial, 1102, 1121
-recovered GeneMark_model.108210_t, internal, 1206, 1262
-recovered GeneMark_model.108210_t, internal, 1288, 1476
-recovered GeneMark_model.108210_t, internal, 4462, 4467
-recovered GeneMark_model.108210_t, internal, 4496, 4552
Couldn't classify 1386, 1476
Couldn't classify 2723, 2884
Sorry, prediction snap_scaffold_691-snap.1-T1 fails validation.
(GGG)	 AG	1386-1476	GT	GAG
(GGA)	 AG	2723-2884	GT	AGG
-recovered snap_scaffold_691-snap.1-T1, internal, 1386, 1476
-recovered snap_scaffold_691-snap.1-T1, internal, 2723, 2884
Couldn't classify 2723, 2884
Sorry, prediction GlimmerHMM_glimmerT_62126-T1 fails validation.
(ATG)	 CG	1324-1476	GT	GAG
(GGA)	 AG	2723-2884	GT	AGG
-recovered GlimmerHMM_glimmerT_62126-T1, initial, 1324, 1476
-recovered GlimmerHMM_glimmerT_62126-T1, internal, 2723, 2884

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108209_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4980
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support