-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_69

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61172-T1
Valid prediction for GlimmerHMM_glimmerT_61171-T1
Valid prediction for GlimmerHMM_glimmerT_61169-T1
Valid prediction for snap_scaffold_69-snap.2-T1
Couldn't classify 23611, 23744
Sorry, prediction GeneMark_model.106375_t fails validation.
(ATG)	 TC	23500-23506	GT	CGG
(CCT)	 AG	23611-23744	GT	GGG
-recovered GeneMark_model.106375_t, initial, 23500, 23506
-recovered GeneMark_model.106375_t, internal, 23611, 23744
Valid prediction for GeneMark_model.106374_t
Valid prediction for GeneMark_model.106369_t
Valid prediction for GeneMark_model.106371_t
Valid prediction for GeneMark_model.106373_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61170-T1
Couldn't classify 24565, 24651
Sorry, prediction snap_scaffold_69-snap.1-T1 fails validation.
(ATG)	 AG	18194-18220	GT	TGG
(CGT)	 AG	20399-20501	GT	CTG
(GCG)	 AG	21593-21679	GT	CAG
(AGA)	 AG	22037-22164	GT	AGG
(GGG)	 AG	22543-22612	GT	TGG
(GGC)	 AG	23466-23572	GT	TGG
(ATC)	 AG	24565-24651	GT	TAG
-recovered snap_scaffold_69-snap.1-T1, initial, 18194, 18220
-recovered snap_scaffold_69-snap.1-T1, internal, 18194, 18220
-recovered snap_scaffold_69-snap.1-T1, internal, 20399, 20501
-recovered snap_scaffold_69-snap.1-T1, internal, 21593, 21679
-recovered snap_scaffold_69-snap.1-T1, internal, 22037, 22164
-recovered snap_scaffold_69-snap.1-T1, internal, 22543, 22612
-recovered snap_scaffold_69-snap.1-T1, internal, 23466, 23572
-recovered snap_scaffold_69-snap.1-T1, internal, 24565, 24651
Valid prediction for GeneMark_model.106372_t
Valid prediction for snap_scaffold_69-snap.3-T1
Valid prediction for Augustus_model.g40693.t1
Couldn't classify 24952, 24986
Sorry, prediction GeneMark_model.106368_t fails validation.
(ATG)	 AG	24613-24653	GT	GTG
(CGA)	 AG	24697-24831	GC	CAG
(GGA)	 AG	24853-24915	GT	GGG
(GGT)	 AG	24952-24986	GC	GGG
-recovered GeneMark_model.106368_t, initial, 24613, 24653
-recovered GeneMark_model.106368_t, internal, 24613, 24653
-recovered GeneMark_model.106368_t, internal, 24697, 24831
-recovered GeneMark_model.106368_t, internal, 24853, 24915
-recovered GeneMark_model.106368_t, internal, 24952, 24986
Valid prediction for GeneMark_model.106370_t
Valid prediction for Augustus_model.g40694.t1
Couldn't classify 1284, 1451
Sorry, prediction GlimmerHMM_glimmerT_61173-T1 fails validation.
(GGG)	 AG	1284-1451	GT	CTG
(AAC)	 AG	3985-4140	TC	GAT
-recovered GlimmerHMM_glimmerT_61173-T1, terminal, 3985, 4140
-recovered GlimmerHMM_glimmerT_61173-T1, internal, 1284, 1451

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6807, rend_intergenic: 1256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 137


building trellis

0.7    
1.4    
2.2    
2.9    
3.6    
4.3    
5.0    
5.8    
6.5    
7.2    
7.9    
8.6    
9.4    
10.1    
10.8    
11.5    
12.2    
12.9    
13.7    
14.4    
15.1    
15.8    
16.5    
17.3    
18.0    
18.7    
19.4    
20.1    
20.9    
21.6    
22.3    
23.0    
23.7    
24.5    
25.2    
25.9    
26.6    
27.3    
28.1    
28.8    
29.5    
30.2    
30.9    
31.7    
32.4    
33.1    
33.8    
34.5    
35.3    
36.0    
36.7    
37.4    
38.1    
38.8    
39.6    
40.3    
41.0    
41.7    
42.4    
43.2    
43.9    
44.6    
45.3    
46.0    
46.8    
47.5    
48.2    
48.9    
49.6    
50.4    
51.1    
51.8    
52.5    
53.2    
54.0    
54.7    
55.4    
56.1    
56.8    
57.6    
58.3    
59.0    
59.7    
60.4    
61.2    
61.9    
62.6    
63.3    
64.0    
64.7    
65.5    
66.2    
66.9    
67.6    
68.3    
69.1    
69.8    
70.5    
71.2    
71.9    
72.7    
73.4    
74.1    
74.8    
75.5    
76.3    
77.0    
77.7    
78.4    
79.1    
79.9    
80.6    
81.3    
82.0    
82.7    
83.5    
84.2    
84.9    
85.6    
86.3    
87.1    
87.8    
88.5    
89.2    
89.9    
90.6    
91.4    
92.1    
92.8    
93.5    
94.2    
95.0    
95.7    
96.4    
97.1    
97.8    
98.6    
99.3    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 6807, rend_intergenic: 1256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support