-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_689

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1817, 1895
Couldn't classify 4729, 4853
Sorry, prediction snap_scaffold_689-snap.1-T1 fails validation.
(ATC)	 AG	1817-1895	GT	AGG
(GAG)	 AG	4321-4413	GT	CGG
(GAC)	 AG	4729-4853	GT	ATG
-recovered snap_scaffold_689-snap.1-T1, internal, 1817, 1895
-recovered snap_scaffold_689-snap.1-T1, internal, 4321, 4413
-recovered snap_scaffold_689-snap.1-T1, internal, 4729, 4853
Couldn't classify 913, 918
Couldn't classify 4729, 4853
Sorry, prediction GeneMark_model.108208_t fails validation.
(AAG)	 AG	913-918	GT	GGG
(AGG)	 AG	941-949	GT	AAG
(AAG)	 AG	971-982	GT	GCG
(GGT)	 AG	1009-1065	GT	AGG
(AGA)	 AG	1098-1131	GT	CAG
(GTG)	 AG	1685-1768	GT	GAG
(ATC)	 AG	1817-1895	GT	AGG
(AGA)	 AG	2480-2492	GT	ATG
(GCG)	 AG	2625-2678	GT	GTG
(AGA)	 AG	3087-3094	GC	AGG
(GAG)	 AG	4321-4452	GT	CAG
(GAC)	 AG	4729-4853	GT	ATG
-recovered GeneMark_model.108208_t, internal, 913, 918
-recovered GeneMark_model.108208_t, internal, 941, 949
-recovered GeneMark_model.108208_t, internal, 971, 982
-recovered GeneMark_model.108208_t, internal, 1009, 1065
-recovered GeneMark_model.108208_t, internal, 1098, 1131
-recovered GeneMark_model.108208_t, internal, 1685, 1768
-recovered GeneMark_model.108208_t, internal, 1817, 1895
-recovered GeneMark_model.108208_t, internal, 2480, 2492
-recovered GeneMark_model.108208_t, internal, 2625, 2678
-recovered GeneMark_model.108208_t, internal, 3087, 3094
-recovered GeneMark_model.108208_t, internal, 4321, 4452
-recovered GeneMark_model.108208_t, internal, 4729, 4853
Couldn't classify 1668, 1717
Sorry, prediction Augustus_model.g41298.t1 fails validation.
(GAG)	 AG	1668-1717	GT	AGG
(ATC)	 AG	1817-1895	GT	AGG
(AAA)	 AG	1983-2134	GT	CAG
(GCG)	 AG	2625-2771	CT	AGC
-recovered Augustus_model.g41298.t1, terminal, 2625, 2771
-recovered Augustus_model.g41298.t1, internal, 1668, 1717
-recovered Augustus_model.g41298.t1, internal, 1817, 1895
-recovered Augustus_model.g41298.t1, internal, 1983, 2134

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4987
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support