-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_687

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 247
Sorry, prediction GeneMark_model.108197_t fails validation.
(AGA)	 AG	34-247	GT	AGG
(GTT)	 AG	298-327	TT	GAT
-recovered GeneMark_model.108197_t, terminal, 298, 327
-recovered GeneMark_model.108197_t, internal, 34, 247
Couldn't classify 402, 497
Sorry, prediction snap_scaffold_687-snap.1-T1 fails validation.
(GAA)	 AG	402-497	GT	AGG
(ATA)	 AG	1099-1322	GT	TAG
(CAA)	 AG	3182-3338	GT	AGG
add_exon() Sorry, snap_scaffold_687-snap.1-T1 3182-3338-terminal-3 is invalid.
-recovered snap_scaffold_687-snap.1-T1, terminal, 3182, 3338
-recovered snap_scaffold_687-snap.1-T1, internal, 402, 497
-recovered snap_scaffold_687-snap.1-T1, internal, 1099, 1322
-recovered snap_scaffold_687-snap.1-T1, internal, 3182, 3338
Valid prediction for GeneMark_model.108199_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108198_t
Couldn't classify 901, 966
Sorry, prediction GeneMark_model.108200_t fails validation.
(AGA)	 AG	901-966	GT	GGG
(AGA)	 AG	986-994	GT	GGG
(GGA)	 AG	1022-1199	AG	GAA
-recovered GeneMark_model.108200_t, terminal, 1022, 1199
-recovered GeneMark_model.108200_t, internal, 901, 966
-recovered GeneMark_model.108200_t, internal, 986, 994
Valid prediction for Augustus_model.g41297.t1
Valid prediction for GlimmerHMM_glimmerT_62124-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62124-T1 3608-3932-terminal-1 is invalid.
Couldn't classify 562, 621
Couldn't classify 3608, 3900
Sorry, prediction snap_scaffold_687-snap.2-T1 fails validation.
(GGT)	 AG	562-621	GT	AAG
(ATC)	 AG	1785-1836	GT	GTG
(GTT)	 AG	3608-3900	GT	CTG
-recovered snap_scaffold_687-snap.2-T1, internal, 562, 621
-recovered snap_scaffold_687-snap.2-T1, internal, 1785, 1836
-recovered snap_scaffold_687-snap.2-T1, internal, 3608, 3900

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3338, rend_intergenic: 1097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4996
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3338, rend_intergenic: 1097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support