-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_684

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62119-T1
Valid prediction for GlimmerHMM_glimmerT_62118-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62118-T1 727-887-terminal-1 is invalid.
Couldn't classify 789, 883
Couldn't classify 2950, 3151
Sorry, prediction GeneMark_model.108194_t fails validation.
(GCA)	 AG	789-883	GT	GCG
(GAG)	 AG	951-1037	GT	AGG
(GAG)	 AG	1062-1070	GT	GAG
(GAA)	 AG	1101-1115	GT	GAG
(GAG)	 AG	1141-1248	GT	AAG
(GAT)	 AG	1277-1310	GT	GAG
(GAT)	 AG	1439-1527	GT	GGG
(CGA)	 AG	1694-1800	GT	AAG
(AGG)	 AG	2735-2747	GT	AGG
(AAG)	 AG	2911-2928	GT	GTG
(AGA)	 AG	2950-3151	GT	TCG
-recovered GeneMark_model.108194_t, internal, 789, 883
-recovered GeneMark_model.108194_t, internal, 951, 1037
-recovered GeneMark_model.108194_t, internal, 1062, 1070
-recovered GeneMark_model.108194_t, internal, 1101, 1115
-recovered GeneMark_model.108194_t, internal, 1141, 1248
-recovered GeneMark_model.108194_t, internal, 1277, 1310
-recovered GeneMark_model.108194_t, internal, 1439, 1527
-recovered GeneMark_model.108194_t, internal, 1694, 1800
-recovered GeneMark_model.108194_t, internal, 2735, 2747
-recovered GeneMark_model.108194_t, internal, 2911, 2928
-recovered GeneMark_model.108194_t, internal, 2950, 3151

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41294.t1
Couldn't classify 1435, 1488
Couldn't classify 4075, 4176
Sorry, prediction snap_scaffold_684-snap.1-T1 fails validation.
(AAA)	 AG	1435-1488	GT	AGG
(TTT)	 AG	3463-3596	GT	AGG
(ATG)	 AG	4075-4176	GT	AGG
-recovered snap_scaffold_684-snap.1-T1, initial, 4075, 4176
-recovered snap_scaffold_684-snap.1-T1, internal, 1435, 1488
-recovered snap_scaffold_684-snap.1-T1, internal, 3463, 3596
-recovered snap_scaffold_684-snap.1-T1, internal, 4075, 4176

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support