-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_683

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 368, 523
Sorry, prediction GeneMark_model.108192_t fails validation.
(TCC)	 AG	368-523	GT	AGG
(GTT)	 AG	673-686	GT	GAG
(ATG)	 AG	938-1023	GT	GAG
(GAA)	 AG	1047-1118	GT	GTG
(CTG)	 AG	1229-1239	GT	CAG
(TGC)	 AG	1491-1699	GT	AGG
(GTG)	 AG	2066-2360	GC	CGG
(GGC)	 AG	2387-2406	CG	GAC
-recovered GeneMark_model.108192_t, initial, 938, 1023
-recovered GeneMark_model.108192_t, terminal, 2387, 2406
-recovered GeneMark_model.108192_t, internal, 368, 523
-recovered GeneMark_model.108192_t, internal, 673, 686
-recovered GeneMark_model.108192_t, internal, 938, 1023
-recovered GeneMark_model.108192_t, internal, 1047, 1118
-recovered GeneMark_model.108192_t, internal, 1229, 1239
-recovered GeneMark_model.108192_t, internal, 1491, 1699
-recovered GeneMark_model.108192_t, internal, 2066, 2360
Couldn't classify 2066, 2509
Sorry, prediction GlimmerHMM_glimmerT_62117-T1 fails validation.
(ATG)	 TT	31-523	GT	AGG
(TGC)	 AG	1491-1699	GT	AGG
(GTG)	 AG	2066-2509	GT	GAG
-recovered GlimmerHMM_glimmerT_62117-T1, initial, 31, 523
-recovered GlimmerHMM_glimmerT_62117-T1, internal, 1491, 1699
-recovered GlimmerHMM_glimmerT_62117-T1, internal, 2066, 2509
Couldn't classify 2066, 2509
Sorry, prediction snap_scaffold_683-snap.2-T1 fails validation.
(ATG)	 AG	1005-1118	GT	GTG
(CTG)	 AG	1508-1699	GT	AGG
(GTG)	 AG	2066-2509	GT	GAG
-recovered snap_scaffold_683-snap.2-T1, initial, 1005, 1118
-recovered snap_scaffold_683-snap.2-T1, internal, 1005, 1118
-recovered snap_scaffold_683-snap.2-T1, internal, 1508, 1699
-recovered snap_scaffold_683-snap.2-T1, internal, 2066, 2509
Couldn't classify 368, 523
Sorry, prediction Augustus_model.g41293.t1 fails validation.
(TCC)	 AG	368-523	GT	AGG
(TGC)	 AG	1491-1699	GT	AGG
(GTG)	 AG	2066-2509	GT	GAG
(GGC)	 AG	3091-3156	TG	AGT
-recovered Augustus_model.g41293.t1, terminal, 3091, 3156
-recovered Augustus_model.g41293.t1, internal, 368, 523
-recovered Augustus_model.g41293.t1, internal, 1491, 1699
-recovered Augustus_model.g41293.t1, internal, 2066, 2509

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_683-snap.1-T1
Couldn't classify 650, 730
Sorry, prediction GeneMark_model.108193_t fails validation.
(AAG)	 AG	650-730	GT	AAG
(AAG)	 AG	799-828	GT	GGG
(AGG)	 AG	941-1063	GC	AGG
(GGA)	 AG	1090-1125	GT	AGG
(AGC)	 AG	1151-1183	GT	ATG
(GGA)	 AG	2016-2027	GT	AGG
(GGG)	 AG	2056-2154	GT	GAG
(GGG)	 AG	2178-2559	TG	GAT
-recovered GeneMark_model.108193_t, terminal, 2178, 2559
-recovered GeneMark_model.108193_t, internal, 650, 730
-recovered GeneMark_model.108193_t, internal, 799, 828
-recovered GeneMark_model.108193_t, internal, 941, 1063
-recovered GeneMark_model.108193_t, internal, 1090, 1125
-recovered GeneMark_model.108193_t, internal, 1151, 1183
-recovered GeneMark_model.108193_t, internal, 2016, 2027
-recovered GeneMark_model.108193_t, internal, 2056, 2154

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4208, rend_intergenic: 1005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 47


building trellis

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30.6    
32.7    
34.7    
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38.8    
40.8    
42.9    
44.9    
46.9    
49.0    
51.0    
53.1    
55.1    
57.1    
59.2    
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87.8    
89.8    
91.8    
93.9    
95.9    
98.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4208, rend_intergenic: 1005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support