-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_682

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 26, 63
Couldn't classify 4895, 4934
Sorry, prediction GeneMark_model.108191_t fails validation.
(GGC)	 AG	26-63	GT	AGG
(AGG)	 AG	95-148	GT	GTG
(AGG)	 AG	184-366	GT	GGG
(GAA)	 AG	653-679	GT	AGG
(AGA)	 AG	954-1091	GT	GGG
(AAG)	 AG	1666-1734	GT	GGG
(AGA)	 AG	1760-1798	GT	GGG
(GGA)	 AG	1824-1862	GT	GAG
(GGA)	 AG	4822-4866	GT	CAG
(GGG)	 AG	4895-4934	GT	CAG
-recovered GeneMark_model.108191_t, internal, 26, 63
-recovered GeneMark_model.108191_t, internal, 95, 148
-recovered GeneMark_model.108191_t, internal, 184, 366
-recovered GeneMark_model.108191_t, internal, 653, 679
-recovered GeneMark_model.108191_t, internal, 954, 1091
-recovered GeneMark_model.108191_t, internal, 1666, 1734
-recovered GeneMark_model.108191_t, internal, 1760, 1798
-recovered GeneMark_model.108191_t, internal, 1824, 1862
-recovered GeneMark_model.108191_t, internal, 4822, 4866
-recovered GeneMark_model.108191_t, internal, 4895, 4934

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4413, 4607
Sorry, prediction snap_scaffold_682-snap.1-T1 fails validation.
(ATG)	 AA	3831-3852	GT	AGG
(TTA)	 AG	4413-4607	GT	AGG
-recovered snap_scaffold_682-snap.1-T1, initial, 3831, 3852
-recovered snap_scaffold_682-snap.1-T1, internal, 4413, 4607
Valid prediction for GlimmerHMM_glimmerT_62116-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62116-T1 3547-3707-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 23


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support