-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_681

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 138, 322
Sorry, prediction snap_scaffold_681-snap.1-T1 fails validation.
(TCC)	 AG	138-322	GT	ATG
(CCC)	 AG	636-792	GT	CAG
(GGC)	 AG	1048-1441	CC	AAC
-recovered snap_scaffold_681-snap.1-T1, terminal, 1048, 1441
-recovered snap_scaffold_681-snap.1-T1, internal, 138, 322
-recovered snap_scaffold_681-snap.1-T1, internal, 636, 792
Valid prediction for GeneMark_model.108189_t
Couldn't classify 97, 246
Sorry, prediction Augustus_model.g41292.t1 fails validation.
(GCA)	 AG	97-246	GT	CAG
(GGC)	 AG	1048-1274	AG	AGA
-recovered Augustus_model.g41292.t1, terminal, 1048, 1274
-recovered Augustus_model.g41292.t1, internal, 97, 246
Valid prediction for GlimmerHMM_glimmerT_62115-T1
Couldn't classify 16, 215
Sorry, prediction GeneMark_model.108187_t fails validation.
(TGT)	 AG	16-215	GT	AAG
(AAA)	 AG	317-322	GT	ATG
(AGG)	 AG	494-510	GT	AGG
(CCT)	 AG	586-788	GT	CAG
(GTA)	 AG	1091-1278	GT	ACG
(AAA)	 AG	1310-1351	GT	TGG
(GCG)	 AG	1376-1430	TG	GAT
-recovered GeneMark_model.108187_t, terminal, 1376, 1430
-recovered GeneMark_model.108187_t, internal, 16, 215
-recovered GeneMark_model.108187_t, internal, 317, 322
-recovered GeneMark_model.108187_t, internal, 494, 510
-recovered GeneMark_model.108187_t, internal, 586, 788
-recovered GeneMark_model.108187_t, internal, 1091, 1278
-recovered GeneMark_model.108187_t, internal, 1310, 1351

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108190_t
Valid prediction for GeneMark_model.108188_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5000
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support