-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_68

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40689.t1
Valid prediction for snap_scaffold_68-snap.3-T1
Valid prediction for snap_scaffold_68-snap.7-T1
Valid prediction for Augustus_model.g40692.t1
Valid prediction for GlimmerHMM_glimmerT_61165-T1
Valid prediction for GeneMark_model.106366_t
Valid prediction for GlimmerHMM_glimmerT_61166-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61163-T1
Valid prediction for Augustus_model.g40690.t1
Valid prediction for snap_scaffold_68-snap.4-T1
Valid prediction for snap_scaffold_68-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61164-T1
Couldn't classify 16268, 16894
Sorry, prediction pasa_asmbl_49455.p1 fails validation.
(AGA)	 CG	16268-16894	TT	AAT
Valid prediction for Augustus_model.g40688.t1
Valid prediction for HiQ_model.g40687.t1
Valid prediction for GlimmerHMM_glimmerT_61168-T1
Couldn't classify 24024, 24073
Sorry, prediction pasa_asmbl_49454.p1 fails validation.
(ATG)	 AT	19515-19523	GT	CGG
(ATG)	 AG	22361-22508	GT	TGG
(AGC)	 AG	23000-23119	GT	AGG
(GAA)	 AG	24024-24073	GA	GAG
-recovered pasa_asmbl_49454.p1, initial, 19515, 19523
-recovered pasa_asmbl_49454.p1, initial, 22361, 22508
-recovered pasa_asmbl_49454.p1, internal, 22361, 22508
-recovered pasa_asmbl_49454.p1, internal, 23000, 23119
Valid prediction for snap_scaffold_68-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61167-T1
Valid prediction for snap_scaffold_68-snap.5-T1
Valid prediction for GeneMark_model.106364_t
Valid prediction for snap_scaffold_68-snap.6-T1
Valid prediction for GeneMark_model.106367_t
Valid prediction for Augustus_model.g40691.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 77


building trellis

1.3    
2.5    
3.8    
5.1    
6.3    
7.6    
8.9    
10.1    
11.4    
12.7    
13.9    
15.2    
16.5    
17.7    
19.0    
20.3    
21.5    
22.8    
24.1    
25.3    
26.6    
27.8    
29.1    
30.4    
31.6    
32.9    
34.2    
35.4    
36.7    
38.0    
39.2    
40.5    
41.8    
43.0    
44.3    
45.6    
46.8    
48.1    
49.4    
50.6    
51.9    
53.2    
54.4    
55.7    
57.0    
58.2    
59.5    
60.8    
62.0    
63.3    
64.6    
65.8    
67.1    
68.4    
69.6    
70.9    
72.2    
73.4    
74.7    
75.9    
77.2    
78.5    
79.7    
81.0    
82.3    
83.5    
84.8    
86.1    
87.3    
88.6    
89.9    
91.1    
92.4    
93.7    
94.9    
96.2    
97.5    
98.7    
-found 7 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support