-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_678

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62112-T1
Couldn't classify 3945, 4020
Sorry, prediction GeneMark_model.108182_t fails validation.
(ATG)	 GT	2768-2790	GT	AAG
(GGA)	 AG	3151-3237	GT	GAG
(AGA)	 AG	3265-3381	GT	GAG
(AGA)	 AG	3405-3455	GT	GAG
(AGA)	 AG	3483-3620	GT	AGG
(GGA)	 AG	3653-3919	GT	AGG
(GTC)	 AG	3945-4020	GT	CTG
-recovered GeneMark_model.108182_t, initial, 2768, 2790
-recovered GeneMark_model.108182_t, internal, 3151, 3237
-recovered GeneMark_model.108182_t, internal, 3265, 3381
-recovered GeneMark_model.108182_t, internal, 3405, 3455
-recovered GeneMark_model.108182_t, internal, 3483, 3620
-recovered GeneMark_model.108182_t, internal, 3653, 3919
-recovered GeneMark_model.108182_t, internal, 3945, 4020

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108181_t
Couldn't classify 4285, 4363
Sorry, prediction snap_scaffold_678-snap.1-T1 fails validation.
(ATG)	 GA	2519-2671	GT	GCG
(TTT)	 AG	3102-3340	GT	CGG
(GGA)	 AG	4285-4363	GT	ATG
-recovered snap_scaffold_678-snap.1-T1, initial, 2519, 2671
-recovered snap_scaffold_678-snap.1-T1, internal, 3102, 3340
-recovered snap_scaffold_678-snap.1-T1, internal, 4285, 4363

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5011
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support