-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_677

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4909, 4962
Sorry, prediction GeneMark_model.108180_t fails validation.
(ATG)	 CC	2519-2573	GT	AAG
(GAG)	 AG	2952-2964	GT	AGG
(ACG)	 AG	3158-3172	GT	AGG
(AGG)	 AG	3202-3210	GT	GAG
(GCC)	 AG	3233-3274	GT	AAG
(TGG)	 AG	4053-4085	GT	GAG
(AGG)	 AG	4111-4134	GT	GGG
(CGT)	 AG	4163-4216	GT	GGG
(AAT)	 AG	4453-4521	GT	AGG
(ACG)	 AG	4849-4884	GT	AAG
(AAA)	 AG	4909-4962	GT	AGG
-recovered GeneMark_model.108180_t, initial, 2519, 2573
-recovered GeneMark_model.108180_t, terminal, 3158, 3172
-recovered GeneMark_model.108180_t, internal, 2952, 2964
-recovered GeneMark_model.108180_t, internal, 3158, 3172
-recovered GeneMark_model.108180_t, internal, 3202, 3210
-recovered GeneMark_model.108180_t, internal, 3233, 3274
-recovered GeneMark_model.108180_t, internal, 4053, 4085
-recovered GeneMark_model.108180_t, internal, 4111, 4134
-recovered GeneMark_model.108180_t, internal, 4163, 4216
-recovered GeneMark_model.108180_t, internal, 4453, 4521
-recovered GeneMark_model.108180_t, internal, 4849, 4884
-recovered GeneMark_model.108180_t, internal, 4909, 4962
Valid prediction for GeneMark_model.108179_t
Valid prediction for snap_scaffold_677-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62110-T1
Valid prediction for snap_scaffold_677-snap.2-T1
add_exon() Sorry, snap_scaffold_677-snap.2-T1 1126-1442-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62111-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62111-T1 1126-1442-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5011
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support