-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_676

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 37, 227
Sorry, prediction GeneMark_model.108177_t fails validation.
(GGA)	 AG	37-227	GT	CTG
(GTG)	 AG	506-572	GT	GAG
(GAG)	 AG	1114-1177	AG	AGA
-recovered GeneMark_model.108177_t, terminal, 1114, 1177
-recovered GeneMark_model.108177_t, internal, 37, 227
-recovered GeneMark_model.108177_t, internal, 506, 572
Couldn't classify 429, 505
Sorry, prediction Augustus_model.g41290.t1 fails validation.
(GCC)	 AG	429-505	GT	AGG
(ACA)	 AG	3041-3163	GT	AGG
(AGT)	 AG	3715-3913	CG	AGC
-recovered Augustus_model.g41290.t1, terminal, 3715, 3913
-recovered Augustus_model.g41290.t1, internal, 429, 505
-recovered Augustus_model.g41290.t1, internal, 3041, 3163

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 49, 114
Sorry, prediction GeneMark_model.108178_t fails validation.
(AGA)	 AG	49-114	GT	GAG
(GGA)	 AG	151-190	GT	GTG
(ACC)	 AG	1167-1204	GT	AGG
(TGA)	 AG	1334-1390	GT	GAG
(GCA)	 AG	1810-1881	GT	GAG
(GCC)	 AG	1920-1977	CA	AAC
-recovered GeneMark_model.108178_t, terminal, 1920, 1977
-recovered GeneMark_model.108178_t, internal, 49, 114
-recovered GeneMark_model.108178_t, internal, 151, 190
-recovered GeneMark_model.108178_t, internal, 1167, 1204
-recovered GeneMark_model.108178_t, internal, 1334, 1390
-recovered GeneMark_model.108178_t, internal, 1810, 1881
Couldn't classify 1869, 1969
Sorry, prediction snap_scaffold_676-snap.1-T1 fails validation.
(ATG)	 GG	122-184	GT	TAG
(ACC)	 AG	1167-1248	GT	TAG
(ATA)	 AG	1869-1969	GT	CAG
-recovered snap_scaffold_676-snap.1-T1, initial, 122, 184
-recovered snap_scaffold_676-snap.1-T1, internal, 1167, 1248
-recovered snap_scaffold_676-snap.1-T1, internal, 1869, 1969

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5013
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support