-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_673

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108172_t
Couldn't classify 419, 517
Sorry, prediction GeneMark_model.108169_t fails validation.
(AGA)	 AG	419-517	GT	CAG
(ACA)	 AG	762-770	GT	GAG
(AGT)	 AG	844-941	GT	ACG
(CAG)	 AG	1041-1107	GT	GAG
(CGC)	 AG	1368-1508	GT	GCG
(AGG)	 AG	1644-1719	GA	GAG
-recovered GeneMark_model.108169_t, terminal, 1644, 1719
-recovered GeneMark_model.108169_t, internal, 419, 517
-recovered GeneMark_model.108169_t, internal, 762, 770
-recovered GeneMark_model.108169_t, internal, 844, 941
-recovered GeneMark_model.108169_t, internal, 1041, 1107
-recovered GeneMark_model.108169_t, internal, 1368, 1508
Valid prediction for GeneMark_model.108170_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 883, 1025
Sorry, prediction snap_scaffold_673-snap.2-T1 fails validation.
(TCA)	 AG	883-1025	GT	AAG
(AAA)	 AG	1452-1541	GT	AAG
(TTC)	 AG	1847-1910	GT	GGG
(TCC)	 AG	2582-2593	GA	GAG
-recovered snap_scaffold_673-snap.2-T1, terminal, 2582, 2593
-recovered snap_scaffold_673-snap.2-T1, internal, 883, 1025
-recovered snap_scaffold_673-snap.2-T1, internal, 1452, 1541
-recovered snap_scaffold_673-snap.2-T1, internal, 1847, 1910
Couldn't classify 4358, 4488
Sorry, prediction snap_scaffold_673-snap.1-T1 fails validation.
(ATG)	 AC	2906-3162	GT	TGG
(GCT)	 AG	4358-4488	GT	ATG
-recovered snap_scaffold_673-snap.1-T1, initial, 2906, 3162
-recovered snap_scaffold_673-snap.1-T1, internal, 4358, 4488
Valid prediction for GeneMark_model.108171_t
Couldn't classify 2157, 2340
Sorry, prediction GlimmerHMM_glimmerT_62109-T1 fails validation.
(ACG)	 AG	2157-2340	GT	AGG
(GCC)	 AG	2945-3166	TG	GAT
-recovered GlimmerHMM_glimmerT_62109-T1, terminal, 2945, 3166
-recovered GlimmerHMM_glimmerT_62109-T1, internal, 2157, 2340
Valid prediction for Augustus_model.g41289.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5027
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 3 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support