-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_672

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108168_t
Couldn't classify 531, 578
Sorry, prediction Augustus_model.g41288.t1 fails validation.
(CTT)	 AG	531-578	GT	TGG
(CTT)	 AG	1072-1119	GT	TGG
(CTA)	 AG	1732-1791	GT	AGG
(GAT)	 AG	2738-2827	GG	GAG
-recovered Augustus_model.g41288.t1, terminal, 2738, 2827
-recovered Augustus_model.g41288.t1, internal, 531, 578
-recovered Augustus_model.g41288.t1, internal, 1072, 1119
-recovered Augustus_model.g41288.t1, internal, 1732, 1791

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1696, 1769
Couldn't classify 4459, 4506
Sorry, prediction snap_scaffold_672-snap.1-T1 fails validation.
(CAT)	 AG	1696-1769	GT	AGG
(GTT)	 AG	1920-1973	GT	TGG
(GTT)	 AG	3402-3443	GT	TGG
(GTT)	 AG	3918-3965	GT	TGG
(GTT)	 AG	4459-4506	GT	TGG
-recovered snap_scaffold_672-snap.1-T1, internal, 1696, 1769
-recovered snap_scaffold_672-snap.1-T1, internal, 1920, 1973
-recovered snap_scaffold_672-snap.1-T1, internal, 3402, 3443
-recovered snap_scaffold_672-snap.1-T1, internal, 3918, 3965
-recovered snap_scaffold_672-snap.1-T1, internal, 4459, 4506

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5033
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support