-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_671

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 131, 145
Sorry, prediction GeneMark_model.108166_t fails validation.
(GTA)	 AG	131-145	GT	GAG
(AGA)	 AG	175-180	GT	AGG
(AGC)	 AG	205-210	GT	AGG
(AGA)	 AG	235-373	AA	AAA
-recovered GeneMark_model.108166_t, terminal, 235, 373
-recovered GeneMark_model.108166_t, internal, 131, 145
-recovered GeneMark_model.108166_t, internal, 175, 180
-recovered GeneMark_model.108166_t, internal, 205, 210

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4944, 5012
Sorry, prediction snap_scaffold_671-snap.1-T1 fails validation.
(ATG)	 GG	38-114	GT	GGG
(AGA)	 AG	2117-2207	GT	CTG
(GAA)	 AG	4944-5012	GT	AGG
-recovered snap_scaffold_671-snap.1-T1, initial, 38, 114
-recovered snap_scaffold_671-snap.1-T1, internal, 2117, 2207
-recovered snap_scaffold_671-snap.1-T1, internal, 4944, 5012
Couldn't classify 37, 114
Sorry, prediction GeneMark_model.108167_t fails validation.
(GAT)	 AG	37-114	GT	GGG
(AGA)	 AG	1969-1989	GT	CTG
(AGA)	 AG	2267-2347	GT	GAG
(GAG)	 AG	2372-2554	GT	GAG
(AAA)	 AG	2585-2747	AG	AGA
-recovered GeneMark_model.108167_t, terminal, 2585, 2747
-recovered GeneMark_model.108167_t, internal, 37, 114
-recovered GeneMark_model.108167_t, internal, 1969, 1989
-recovered GeneMark_model.108167_t, internal, 2267, 2347
-recovered GeneMark_model.108167_t, internal, 2372, 2554
Valid prediction for GlimmerHMM_glimmerT_62108-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5035
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support