-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_669

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 15, 41
Sorry, prediction GeneMark_model.108163_t fails validation.
(GGA)	 AG	15-41	GT	AGG
(AGG)	 AG	68-97	GT	GGG
(GCT)	 AG	303-449	GT	CAG
(GAC)	 AG	476-664	GT	AGG
(AGA)	 AG	715-726	GT	GAG
(GTC)	 AG	771-776	GT	CTG
(GCA)	 AG	1111-1164	GT	GGG
(AGA)	 AG	1192-1260	GT	AGG
(CAG)	 AG	1282-1455	GT	GCG
(AGA)	 AG	1476-1487	GT	AGG
(GAG)	 AG	1510-1707	GT	GGG
(AGG)	 AG	1733-1768	GC	GAG
(AAG)	 AG	1793-1841	GT	AGG
(AAC)	 AG	2846-2941	GT	AGG
(GGG)	 AG	3599-3649	GC	AAG
-recovered GeneMark_model.108163_t, terminal, 3599, 3649
-recovered GeneMark_model.108163_t, internal, 15, 41
-recovered GeneMark_model.108163_t, internal, 68, 97
-recovered GeneMark_model.108163_t, internal, 303, 449
-recovered GeneMark_model.108163_t, internal, 476, 664
-recovered GeneMark_model.108163_t, internal, 715, 726
-recovered GeneMark_model.108163_t, internal, 771, 776
-recovered GeneMark_model.108163_t, internal, 1111, 1164
-recovered GeneMark_model.108163_t, internal, 1192, 1260
-recovered GeneMark_model.108163_t, internal, 1282, 1455
-recovered GeneMark_model.108163_t, internal, 1476, 1487
-recovered GeneMark_model.108163_t, internal, 1510, 1707
-recovered GeneMark_model.108163_t, internal, 1733, 1768
-recovered GeneMark_model.108163_t, internal, 1793, 1841
-recovered GeneMark_model.108163_t, internal, 2846, 2941
-recovered GeneMark_model.108163_t, internal, 3599, 3649
Valid prediction for GlimmerHMM_glimmerT_62106-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4331, 4725
Sorry, prediction snap_scaffold_669-snap.1-T1 fails validation.
(ATG)	 AG	257-296	GT	AGG
(CAC)	 AG	3961-3998	GT	AGG
(AAA)	 AG	4331-4725	GT	AGG
-recovered snap_scaffold_669-snap.1-T1, initial, 257, 296
-recovered snap_scaffold_669-snap.1-T1, internal, 257, 296
-recovered snap_scaffold_669-snap.1-T1, internal, 3961, 3998
-recovered snap_scaffold_669-snap.1-T1, internal, 4331, 4725

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5036
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support