-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_668

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 52
Sorry, prediction GeneMark_model.108161_t fails validation.
(CAC)	 AG	9-52	GT	GGG
(AGA)	 AG	87-296	GC	GAG
(GGG)	 AG	327-383	GT	AGG
(CAG)	 AG	533-599	CC	AGC
-recovered GeneMark_model.108161_t, terminal, 533, 599
-recovered GeneMark_model.108161_t, internal, 9, 52
-recovered GeneMark_model.108161_t, internal, 87, 296
-recovered GeneMark_model.108161_t, internal, 327, 383

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4067, 4269
Sorry, prediction Augustus_model.g41284.t1 fails validation.
(ATG)	 GC	3290-3298	GT	TGG
(GGC)	 AG	3384-3555	GT	AGG
(GGG)	 AG	4067-4269	GT	AGG
-recovered Augustus_model.g41284.t1, initial, 3290, 3298
-recovered Augustus_model.g41284.t1, internal, 3384, 3555
-recovered Augustus_model.g41284.t1, internal, 4067, 4269
Couldn't classify 3343, 3555
Couldn't classify 4126, 4269
Sorry, prediction snap_scaffold_668-snap.1-T1 fails validation.
(TGC)	 AG	3343-3555	GT	AGG
(GGG)	 AG	4067-4107	GT	AGG
(GTG)	 AG	4126-4269	GT	AGG
-recovered snap_scaffold_668-snap.1-T1, internal, 3343, 3555
-recovered snap_scaffold_668-snap.1-T1, internal, 4067, 4107
-recovered snap_scaffold_668-snap.1-T1, internal, 4126, 4269
Valid prediction for GeneMark_model.108162_t
Couldn't classify 3328, 3569
Sorry, prediction GlimmerHMM_glimmerT_62105-T1 fails validation.
(ATC)	 AG	3328-3569	GT	ATG
(GTA)	 AG	4108-4311	GA	AGG
-recovered GlimmerHMM_glimmerT_62105-T1, terminal, 4108, 4311
-recovered GlimmerHMM_glimmerT_62105-T1, internal, 3328, 3569

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5049
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support