-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_666

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4425, 4443
Sorry, prediction GeneMark_model.108157_t fails validation.
(ATG)	 AT	2640-2653	GT	GGG
(GAA)	 AG	4251-4283	GT	CAG
(ACG)	 AG	4307-4363	GT	GGG
(AGA)	 AG	4425-4443	GT	AGG
-recovered GeneMark_model.108157_t, initial, 2640, 2653
-recovered GeneMark_model.108157_t, internal, 4251, 4283
-recovered GeneMark_model.108157_t, internal, 4307, 4363
-recovered GeneMark_model.108157_t, internal, 4425, 4443

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5063
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support