-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_663

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 381, 522
Sorry, prediction snap_scaffold_663-snap.1-T1 fails validation.
(AGG)	 AG	381-522	GT	TGG
(AAA)	 AG	986-1141	GC	GAG
-recovered snap_scaffold_663-snap.1-T1, terminal, 986, 1141
-recovered snap_scaffold_663-snap.1-T1, internal, 381, 522
-recovered snap_scaffold_663-snap.1-T1, internal, 986, 1141
Couldn't classify 346, 560
Sorry, prediction GeneMark_model.108154_t fails validation.
(CCT)	 AG	346-560	GT	GGG
(GCG)	 AG	581-610	GT	GGG
(GAG)	 AG	646-660	GT	GGG
(GAC)	 AG	686-700	GT	GGG
(AAG)	 AG	725-808	GT	AGG
(GAG)	 AG	834-889	GT	AGG
(CTG)	 AG	1130-1170	TG	AAT
-recovered GeneMark_model.108154_t, terminal, 1130, 1170
-recovered GeneMark_model.108154_t, internal, 346, 560
-recovered GeneMark_model.108154_t, internal, 581, 610
-recovered GeneMark_model.108154_t, internal, 646, 660
-recovered GeneMark_model.108154_t, internal, 686, 700
-recovered GeneMark_model.108154_t, internal, 725, 808
-recovered GeneMark_model.108154_t, internal, 834, 889
Valid prediction for GlimmerHMM_glimmerT_62101-T1
Couldn't classify 381, 543
Sorry, prediction Augustus_model.g41283.t1 fails validation.
(AGG)	 AG	381-543	GT	AGG
(AAA)	 AG	986-1141	GC	GAG
-recovered Augustus_model.g41283.t1, terminal, 986, 1141
-recovered Augustus_model.g41283.t1, internal, 381, 543
-recovered Augustus_model.g41283.t1, internal, 986, 1141

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5067
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support