-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_66

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40681.t1
Valid prediction for Augustus_model.g40682.t1
Valid prediction for GeneMark_model.106357_t
Valid prediction for GlimmerHMM_glimmerT_61157-T1
Valid prediction for snap_scaffold_66-snap.1-T1
Valid prediction for GeneMark_model.106356_t
add_exon() Sorry, GeneMark_model.106356_t 2295-2608-initial-1 is invalid.
add_exon() Sorry, GeneMark_model.106356_t 5292-5366-internal-3 is invalid.
add_exon() Sorry, GeneMark_model.106356_t 7132-7355-internal-3 is invalid.
add_exon() Sorry, GeneMark_model.106356_t 7412-7531-internal-2 is invalid.
Valid prediction for Augustus_model.g40685.t1
Valid prediction for Augustus_model.g40683.t1
Valid prediction for GlimmerHMM_glimmerT_61155-T1
Valid prediction for GlimmerHMM_glimmerT_61154-T1
Valid prediction for GeneMark_model.106359_t
Couldn't classify 2295, 2629
Sorry, prediction pasa_asmbl_49443.p1 fails validation.
(ATG)	 AC	1847-1868	GT	CAG
(ATG)	 AG	2295-2629	GG	GAG
-recovered pasa_asmbl_49443.p1, initial, 1847, 1868

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_66-snap.3-T1
Valid prediction for snap_scaffold_66-snap.2-T1
Valid prediction for Augustus_model.g40684.t1
Valid prediction for snap_scaffold_66-snap.4-T1
Valid prediction for GeneMark_model.106358_t
Valid prediction for GlimmerHMM_glimmerT_61156-T1
Valid prediction for GlimmerHMM_glimmerT_61153-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 6 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support