-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_658

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108146_t
add_exon() Sorry, GeneMark_model.108146_t 546-813-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62097-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62097-T1 546-813-terminal-1 is invalid.
Valid prediction for Augustus_model.g41278.t1
add_exon() Sorry, Augustus_model.g41278.t1 546-813-terminal-1 is invalid.
Valid prediction for snap_scaffold_658-snap.1-T1
add_exon() Sorry, snap_scaffold_658-snap.1-T1 546-813-terminal-1 is invalid.
Couldn't classify 4807, 4961
Sorry, prediction snap_scaffold_658-snap.2-T1 fails validation.
(ATG)	 AA	2286-2313	GT	CCG
(CCC)	 AG	4807-4961	GT	CAG
-recovered snap_scaffold_658-snap.2-T1, initial, 2286, 2313
-recovered snap_scaffold_658-snap.2-T1, internal, 4807, 4961

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 206, 238
Sorry, prediction GeneMark_model.108147_t fails validation.
(ACC)	 AG	206-238	GT	CTG
(AGA)	 AG	325-339	GT	GAG
(AGA)	 AG	362-412	GT	GAG
(AGA)	 AG	446-502	GT	GAG
(AGA)	 AG	543-554	GT	AGG
(GGG)	 AG	2624-2730	GT	GGG
(AGC)	 AG	2926-2951	CA	AAC
-recovered GeneMark_model.108147_t, terminal, 2926, 2951
-recovered GeneMark_model.108147_t, internal, 206, 238
-recovered GeneMark_model.108147_t, internal, 325, 339
-recovered GeneMark_model.108147_t, internal, 362, 412
-recovered GeneMark_model.108147_t, internal, 446, 502
-recovered GeneMark_model.108147_t, internal, 543, 554
-recovered GeneMark_model.108147_t, internal, 2624, 2730
Couldn't classify 4219, 4536
Sorry, prediction pasa_asmbl_49442.p1 fails validation.
(ATG)	 CC	4219-4536	TT	CCT

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5093
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support