-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_656

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_656-snap.1-T1
Couldn't classify 2647, 2806
Sorry, prediction GeneMark_model.108143_t fails validation.
(ATG)	 CT	2314-2339	GT	TGG
(TCG)	 AG	2451-2608	GT	CTG
(GGG)	 AG	2647-2806	GT	GGG
-recovered GeneMark_model.108143_t, initial, 2314, 2339
-recovered GeneMark_model.108143_t, internal, 2451, 2608
-recovered GeneMark_model.108143_t, internal, 2647, 2806

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5104
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support