-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_655

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1068, 1277
Sorry, prediction GlimmerHMM_glimmerT_62094-T1 fails validation.
(CTG)	 AG	1068-1277	GT	AAG
(TTG)	 AG	3610-4325	TG	GAT
-recovered GlimmerHMM_glimmerT_62094-T1, terminal, 3610, 4325
-recovered GlimmerHMM_glimmerT_62094-T1, internal, 1068, 1277
Couldn't classify 3610, 4098
Sorry, prediction Augustus_model.g41276.t1 fails validation.
(ATG)	 GG	775-931	GT	AGG
(CTG)	 AG	1068-1277	GT	AAG
(ATC)	 AG	3131-3157	GT	AGG
(TTG)	 AG	3610-4098	GT	AGG
-recovered Augustus_model.g41276.t1, initial, 775, 931
-recovered Augustus_model.g41276.t1, internal, 1068, 1277
-recovered Augustus_model.g41276.t1, internal, 3131, 3157
-recovered Augustus_model.g41276.t1, internal, 3610, 4098
Valid prediction for snap_scaffold_655-snap.1-T1
Valid prediction for snap_scaffold_655-snap.2-T1
Valid prediction for GeneMark_model.108142_t
Couldn't classify 445, 472
Couldn't classify 584, 900
Sorry, prediction pasa_asmbl_49441.p1 fails validation.
(CCT)	 TT	445-472	GT	CGG
(GAA)	 AG	584-900	AA	AGA
Couldn't classify 3763, 4010
Sorry, prediction GeneMark_model.108141_t fails validation.
(ATG)	 CT	3682-3718	GT	AGG
(GCC)	 AG	3763-4010	GT	ATG
-recovered GeneMark_model.108141_t, initial, 3682, 3718
-recovered GeneMark_model.108141_t, internal, 3763, 4010

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5113
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support