-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_648

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62082-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1027, 1093
Sorry, prediction GeneMark_model.108128_t fails validation.
(GTC)	 AG	1027-1093	GT	GGG
(CCC)	 AG	2116-2204	AT	AAA
-recovered GeneMark_model.108128_t, terminal, 2116, 2204
-recovered GeneMark_model.108128_t, internal, 1027, 1093
Couldn't classify 497, 561
Sorry, prediction snap_scaffold_648-snap.1-T1 fails validation.
(GAC)	 AG	497-561	GT	CGG
(GCC)	 AG	1037-1093	GT	GGG
(CCC)	 AG	2116-2204	AT	AAA
-recovered snap_scaffold_648-snap.1-T1, terminal, 2116, 2204
-recovered snap_scaffold_648-snap.1-T1, internal, 497, 561
-recovered snap_scaffold_648-snap.1-T1, internal, 1037, 1093

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5161
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support