-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_647

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108125_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3148, 3345
Sorry, prediction GlimmerHMM_glimmerT_62081-T1 fails validation.
(GAA)	 AG	3148-3345	GT	AGG
(CTA)	 AG	3885-4061	GT	CTG
(GGT)	 AG	4723-4765	CT	GAC
-recovered GlimmerHMM_glimmerT_62081-T1, terminal, 4723, 4765
-recovered GlimmerHMM_glimmerT_62081-T1, internal, 3148, 3345
-recovered GlimmerHMM_glimmerT_62081-T1, internal, 3885, 4061
Couldn't classify 3148, 3345
Couldn't classify 4723, 4872
Sorry, prediction Augustus_model.g41268.t1 fails validation.
(GAA)	 AG	3148-3345	GT	AGG
(CTA)	 AG	3885-4140	GT	TGG
(GGT)	 AG	4723-4872	GT	AGG
-recovered Augustus_model.g41268.t1, internal, 3148, 3345
-recovered Augustus_model.g41268.t1, internal, 3885, 4140
-recovered Augustus_model.g41268.t1, internal, 4723, 4872
Couldn't classify 3148, 3345
Couldn't classify 4723, 4872
Sorry, prediction snap_scaffold_647-snap.1-T1 fails validation.
(GAA)	 AG	3148-3345	GT	AGG
(CTA)	 AG	3885-4140	GT	TGG
(GGT)	 AG	4723-4872	GT	AGG
-recovered snap_scaffold_647-snap.1-T1, internal, 3148, 3345
-recovered snap_scaffold_647-snap.1-T1, internal, 3885, 4140
-recovered snap_scaffold_647-snap.1-T1, internal, 4723, 4872
Couldn't classify 12, 37
Sorry, prediction GeneMark_model.108127_t fails validation.
(GGG)	 AG	12-37	GT	AGG
(AAG)	 AG	114-203	GT	ATG
(AGA)	 AG	233-320	GG	GAG
-recovered GeneMark_model.108127_t, terminal, 233, 320
-recovered GeneMark_model.108127_t, internal, 12, 37
-recovered GeneMark_model.108127_t, internal, 114, 203
Couldn't classify 3167, 3345
Couldn't classify 4723, 4872
Sorry, prediction pasa_asmbl_49434.p1 fails validation.
(GTG)	 AG	3167-3345	GT	AGG
(CTA)	 AG	3885-4140	GT	TGG
(GGT)	 AG	4723-4872	GT	AGG
-recovered pasa_asmbl_49434.p1, internal, 3167, 3345
-recovered pasa_asmbl_49434.p1, internal, 3885, 4140
-recovered pasa_asmbl_49434.p1, internal, 4723, 4872
Couldn't classify 4723, 4872
Sorry, prediction GeneMark_model.108124_t fails validation.
(ATG)	 GC	3245-3345	GT	AGG
(CTA)	 AG	3885-4127	GT	GAG
(GAA)	 AG	4400-4405	GT	GAG
(GAG)	 AG	4426-4461	GT	AGG
(GGG)	 AG	4494-4566	GT	GGG
(GGT)	 AG	4723-4872	GT	AGG
-recovered GeneMark_model.108124_t, initial, 3245, 3345
-recovered GeneMark_model.108124_t, internal, 3885, 4127
-recovered GeneMark_model.108124_t, internal, 4400, 4405
-recovered GeneMark_model.108124_t, internal, 4426, 4461
-recovered GeneMark_model.108124_t, internal, 4494, 4566
-recovered GeneMark_model.108124_t, internal, 4723, 4872

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5167
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support