-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_645

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108120_t
Couldn't classify 1901, 1909
Sorry, prediction GeneMark_model.108118_t fails validation.
(AGA)	 AG	1901-1909	GT	GTG
(AGA)	 AG	2009-2047	GT	GAG
(GTA)	 AG	2086-2158	GA	GAG
-recovered GeneMark_model.108118_t, terminal, 2086, 2158
-recovered GeneMark_model.108118_t, internal, 1901, 1909
-recovered GeneMark_model.108118_t, internal, 2009, 2047
Valid prediction for snap_scaffold_645-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_645-snap.2-T1
Valid prediction for GeneMark_model.108119_t
Couldn't classify 848, 913
Sorry, prediction GeneMark_model.108121_t fails validation.
(AGC)	 AG	848-913	GT	GAG
(GAG)	 AG	940-1080	GT	GGG
(GAA)	 AG	1106-1190	TT	AGT
-recovered GeneMark_model.108121_t, terminal, 1106, 1190
-recovered GeneMark_model.108121_t, internal, 848, 913
-recovered GeneMark_model.108121_t, internal, 940, 1080

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3421, rend_intergenic: 2829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5197
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3421, rend_intergenic: 2829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support