-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_642

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41264.t1
Valid prediction for GeneMark_model.108112_t
Couldn't classify 4924, 5053
Sorry, prediction GlimmerHMM_glimmerT_62076-T1 fails validation.
(ATG)	 CC	3573-3706	GT	AAG
(CGA)	 AG	4924-5053	GT	TGG
-recovered GlimmerHMM_glimmerT_62076-T1, initial, 3573, 3706
-recovered GlimmerHMM_glimmerT_62076-T1, internal, 4924, 5053
Couldn't classify 5165, 5222
Sorry, prediction snap_scaffold_642-snap.3-T1 fails validation.
(ATG)	 CC	3573-3706	GT	AAG
(CGA)	 AG	4924-5123	GT	TGG
(GTC)	 AG	5165-5222	GT	AGG
-recovered snap_scaffold_642-snap.3-T1, initial, 3573, 3706
-recovered snap_scaffold_642-snap.3-T1, internal, 4924, 5123
-recovered snap_scaffold_642-snap.3-T1, internal, 5165, 5222
Valid prediction for snap_scaffold_642-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 48, 367
Couldn't classify 5089, 5146
Sorry, prediction snap_scaffold_642-snap.1-T1 fails validation.
(CCA)	 AG	48-367	GT	CCG
(GAC)	 AG	1723-1843	GT	GGG
(TAA)	 AG	5089-5146	GT	AAG
-recovered snap_scaffold_642-snap.1-T1, internal, 48, 367
-recovered snap_scaffold_642-snap.1-T1, internal, 1723, 1843
-recovered snap_scaffold_642-snap.1-T1, internal, 5089, 5146
Couldn't classify 78, 176
Sorry, prediction GeneMark_model.108113_t fails validation.
(GAG)	 AG	78-176	GT	GAG
(GAG)	 AG	326-367	GT	CCG
(GGG)	 AG	564-572	GT	GAG
(AGA)	 AG	612-677	GT	GAG
(AGA)	 AG	711-719	GT	GAG
(AGA)	 AG	745-753	GT	GAG
(AGA)	 AG	775-792	GT	GAG
(ACA)	 AG	818-826	GC	GAG
(AGA)	 AG	850-954	GT	GAG
(ACA)	 AG	980-1009	GT	GAG
(GCT)	 AG	1243-1278	GT	GGG
(GCT)	 AG	1749-1766	GT	TGG
(GCT)	 AG	1801-1972	CT	AAC
-recovered GeneMark_model.108113_t, terminal, 78, 176
-recovered GeneMark_model.108113_t, terminal, 1801, 1972
-recovered GeneMark_model.108113_t, internal, 78, 176
-recovered GeneMark_model.108113_t, internal, 326, 367
-recovered GeneMark_model.108113_t, internal, 564, 572
-recovered GeneMark_model.108113_t, internal, 612, 677
-recovered GeneMark_model.108113_t, internal, 711, 719
-recovered GeneMark_model.108113_t, internal, 745, 753
-recovered GeneMark_model.108113_t, internal, 775, 792
-recovered GeneMark_model.108113_t, internal, 818, 826
-recovered GeneMark_model.108113_t, internal, 850, 954
-recovered GeneMark_model.108113_t, internal, 980, 1009
-recovered GeneMark_model.108113_t, internal, 1243, 1278
-recovered GeneMark_model.108113_t, internal, 1749, 1766

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5177, rend_intergenic: 732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5224
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5177, rend_intergenic: 732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support