-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_640

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62073-T1
Couldn't classify 750, 927
Sorry, prediction snap_scaffold_640-snap.1-T1 fails validation.
(GCT)	 AG	750-927	GT	AGG
(GTA)	 AG	1124-1430	GT	AGG
(GGC)	 AG	1592-1882	CA	AAC
-recovered snap_scaffold_640-snap.1-T1, terminal, 1592, 1882
-recovered snap_scaffold_640-snap.1-T1, internal, 750, 927
-recovered snap_scaffold_640-snap.1-T1, internal, 1124, 1430
Couldn't classify 750, 927
Sorry, prediction Augustus_model.g41261.t1 fails validation.
(GCT)	 AG	750-927	GT	AGG
(GTA)	 AG	1124-1430	GT	AGG
(GGC)	 AG	1592-1882	CA	AAC
-recovered Augustus_model.g41261.t1, terminal, 1592, 1882
-recovered Augustus_model.g41261.t1, internal, 750, 927
-recovered Augustus_model.g41261.t1, internal, 1124, 1430
Couldn't classify 4596, 4902
Sorry, prediction snap_scaffold_640-snap.2-T1 fails validation.
(ATG)	 AT	2919-2976	GT	TGG
(GTC)	 AG	3209-3448	GT	TGG
(GCT)	 AG	4222-4399	GT	AGG
(GTA)	 AG	4596-4902	GT	AGG
-recovered snap_scaffold_640-snap.2-T1, initial, 2919, 2976
-recovered snap_scaffold_640-snap.2-T1, internal, 3209, 3448
-recovered snap_scaffold_640-snap.2-T1, internal, 4222, 4399
-recovered snap_scaffold_640-snap.2-T1, internal, 4596, 4902
Valid prediction for GeneMark_model.108104_t
Couldn't classify 4596, 4902
Sorry, prediction Augustus_model.g41262.t1 fails validation.
(ATG)	 AT	2919-2976	GT	TGG
(GTC)	 AG	3209-3448	GT	TGG
(GCT)	 AG	4222-4399	GT	AGG
(GTA)	 AG	4596-4902	GT	AGG
-recovered Augustus_model.g41262.t1, initial, 2919, 2976
-recovered Augustus_model.g41262.t1, internal, 3209, 3448
-recovered Augustus_model.g41262.t1, internal, 4222, 4399
-recovered Augustus_model.g41262.t1, internal, 4596, 4902
Couldn't classify 4942, 5021
Sorry, prediction GeneMark_model.108106_t fails validation.
(ATG)	 TC	4540-4902	GT	AGG
(AGA)	 AG	4942-5021	GT	ATG
-recovered GeneMark_model.108106_t, initial, 4540, 4902
-recovered GeneMark_model.108106_t, internal, 4942, 5021
Valid prediction for GeneMark_model.108105_t
Couldn't classify 4596, 4902
Sorry, prediction GlimmerHMM_glimmerT_62074-T1 fails validation.
(ATG)	 AT	3226-3448	GT	TGG
(GCT)	 AG	4222-4399	GT	AGG
(GTA)	 AG	4596-4902	GT	AGG
-recovered GlimmerHMM_glimmerT_62074-T1, initial, 3226, 3448
-recovered GlimmerHMM_glimmerT_62074-T1, internal, 4222, 4399
-recovered GlimmerHMM_glimmerT_62074-T1, internal, 4596, 4902

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5233
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support